Gene detail

Detailed information of Lsat_s112.g0043.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s112.g0043.t1	ADENOSINE KINASE	Lsat_scaffold112	1252988	1273310	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s112.g0043.t1

AAAGCAACACTCAAAAATGAGACTCACCAGGCTGTTGCTAAGCAACTATTTTAAACGCTACATCGAGCGTGAGATGTACAGTGAAAACTTGCGTCGGACATGGCAACCAGTCACCGGGTACAAAGAGTTAAAGAAGAAGAAATGGTTCTACAGCGAATATCGACCATGGACAGACGACTCAAAGCAGGAGAACATCCCTGGGAAGTGGCATCCTACAGTGCGTCTAGAACCAATCAAAGAGTGGACATTATTCAAAGGAGATGTGGGTTCGTGGCTAATCTGCAGACATAAATCTAGCTGTGTGTTGTCACGGCAATCTCCACTAGCAAGCTGCAGACAGTACTTCAGCAGCAGAAAATCCATCATGTCACAGCTTCCTGAGAAAGTGCTCTTGGGCATAGGCAATCCACTACTGGACATCACAGTATCTGCCAATGAAGCCTTCCTGCAGAAGTATGATCTCGAGTCAAACAATGCCATTGTGGCTGATAAGGAGAAGCACACAGCCCTCTTCGAAGATATGGTCACGATCTATAAACCAGAATATGGGGCTGGTGGCGCCACTCAGAATGCCATCCGGGTGGCACAGTGGTTGCTACAGCAACCAAAGGTGACTGGATTTCTCGGGTGCGTCGGCAATGATGAGAATGCGCAGCTGCTGCAGCGTGCGGCGGAGCGCGATGGTGTGTACGTCCACTACTGCGTTGATGACAAAGAACCGACTGGCACCTGTGGTGCCATTATAACTGGCGAGGATCGTTCTCTCGTGGCGAATCTTGGTGCTGCACAACACCTCTCTTGTAACTGGCTAGTGCAGCCGGACAACTGGGCACTGGTCAAGAAAGCCCAGTTCTATTACATAGCCGGGTTCCTATATCAGACATGTCCCGATGCGGTTCACAGAATTGCCAAACACTCCAGTGAGAACAACAAGACTCTAGTGATGAATCTCTCGGCGCCGGCACTATGCACGTACTTCAGTGACCCGAAGATCAACATCATGTCCTACATCGATGTGCTCTTTGGCAATGGGGTTGAAGCGGAGGTGTTCTGTAAGCAGCTCGGTATCCCGACCGGCGATCACACCAGCATGGCCCTCGCTGTCACAGAACTTCCGAAGAAGAACCAGGATCGTAGTCGCATTGTCGTGTTCACGCGTGGACCGCGCTCCACCATCGTGGCGAGGGACGGCAAAGCTACCGAGTATCCCATCAAGCCAATTGACAAGTCCACAATCAAGGACACCAACGGCTGCGGAGATGCATTTGTTGGTGGATTCCTTTCGCAGCTTGTTCTGGGGCGCCCCCTGGAGGAATGTGTGGAGGTCCTCGTCGGAAAGGACAAGGGAAAATTTGGGGTCATCAGCAGCATCATCAAGGAGCGAAACTGGGTCTATGTGGAGGGACTCAACTGTGAGTTCAAGGTGGATGAACAGAATGCAGCCGGGAAAGCCGTATGTCAGAAGACAGAGAAGCCACTGCTCGTTACATCTCAAGTCAAACTTCTCGATCCGTCAGACAGGAAGGCTACCGACATAGAGTGGAGGTTCACGGAAAAAGGGGAGAGGGTTCGGGTGTCGGTGCGGACGGGAAGAATCATCCCACTGCCAGACGAAGTGAATGAACTCGACGACTTCGTGGTGCCGAAAACTTATATTGAATCGGCCAAAGACACAGTAAACAACGAAGTGACAGAGGTGACCTTTAAACCCAAACTAACGACCTTCAACGAGGATATCATGGAAGCTATGGGAATCAATGAAGACAGAAAACGAGCAAAAACTTACTTCTACTGAACAAGACGATTTAGTAGTGGTGGACTGATCAGTGTTATATTGTTCCCTATTAAAGGCAGTTGTTGGAAAAACTGCCAACAGCTCTGAATTGTAGTCGGAATAATAAAAAATTTGGTTATGTTTACTACTGGCTTGGAGTGGATTTGATTAGGACGAAACGTAGATCAGATACTGTAGTAGATATCTAACTTTGTCTAAAACACTAATAAATGTCGCCAAGTATGCAATTTGACATTGTGTTAAATCCACATAATTTTTCCTTTACACAAGAAGCACTAAAGCCAACAATGTTTTATGAGTATTGAAGCTAAAATGTTATTGTGACTACTGACACAAAATGTTATTGCGACTACCAATACTGAAATATTATTGACTACCAACACTAAAATGTCATTGTGACTAGACATTAAAAATTTTATTTGCGACTACTGACACTAAAATGTTGTGACCACTGACACTAAAATGTTATTGTGACTACCAACACTGAAATGTTATTGTGACTACCAACACTGAAATGTTATTGTGCAGTTAAAATAAATCAAGGAACTATAAATGCTATAAAGTCACTAAAACAGAGACATGACCAACATTCATCAACAGTTAGTTGAAAGCCAAACATATCTTGTGGAATTTTAGGTGGTCTTGAGAAACACAGTACAGCGGTTCAGTAAAGAACTGTTGTGATAACAACTGAGTGTCACTATTGTGTTAATTGTA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00294	PfkB	pfkB family carbohydrate kinase	Domain	Interproscan
PF00467	KOW	KOW motif	Family	Interproscan
PF17136	ribosomal_L24	Ribosomal proteins 50S L24/mitochondrial 39S L24	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001805	Family	Adenosine kinase	Interproscan
IPR003256	Family	Large ribosomal subunit protein uL24	Interproscan
IPR005824	Domain	KOW	Interproscan
IPR008991	Homologous_superfamily	Translation protein SH3-like domain superfamily	Interproscan
IPR011611	Domain	Carbohydrate kinase PfkB	Interproscan
IPR014722	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan
IPR029056	Homologous_superfamily	Ribokinase-like	Interproscan
IPR041988	Domain	Large ribosomal subunit protein uL24, KOW domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45769	ADENOSINE KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0004001	Molecular Function	adenosine kinase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006144	Biological Process	purine nucleobase metabolic process	Interproscan
GO:0006166	Biological Process	purine ribonucleoside salvage	Interproscan
GO:0006412	Biological Process	translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-