Gene detail

Detailed information of Lsat_s099.g0042.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s099.g0042.t1	IP01054P	Lsat_scaffold099	1329567	1349815	-

Gene Structure

More details in Jbrowse Sequence

CDS

Lsat_s099.g0042.t1

ATGATTCGGGAAGAAGCAATCGCCAGCGATCCGGATAGACAAAGGGGCGGGGTCAACGACAACGGCCCTGACCAATCATCGGCGAGCGATGTCGGCCCGACGTCGGCCGATGCATGTGCGATGCTCTTCGGCAGGGAAATTTCTCTGGTAACAGACGCTCCTATATCACCACGGCTACGTTCGCGGCACCTGTACATAGTTACGATATTGACTTGTAGTGATCCACTGTTTCGCGTCGTTGTCAAACTTCCCATCGTTATGACGAGAGACCACAAGGCGGACTGCGACAGTTGTCAGAGCGGCGACGATGACACGGCGACATCGTCTCTGTCACGATCGCCAGCGCCGTCTTCTCCGTGCTCCATGTCGTCTTCGTCGTCGTCGATGTCACCCGTCACTGTGCCGACCAAGTCGACGTCACAGACTCTGTCGTTCGGCATCAGTCGAATACTGGACGACTCGCCTCGGAAACCAGCGCCTTTCCCCCAAGTCACGTTTCCTTTTCCCCACCGGGAACAGCCCTATCCCAACCCGGGTATAGGTAATGGGATTCTCGCCTCGTCGGCGGCCTTTCTCGGGGCGGCGTCGATGTCCTGTTTCCCGGCCGATGGGCACCGCGCTCAGACGACTTCCCCGGGCGTGATCAAAGTCCCGGCACACCGTCCCGGTTCCATCGTCCATTTCCCGCCGTTCCCAGCGTCAACAATGTTTCCCTGGATGGCGGACCGGAAGGACGGGCTAACGGTGACGCGACGTATCGGCCATCCGTACCAGAACCGAGCACCTCCGAAACGGAAGAAACCACGGACGTCGTTCTCTCGTCTACAGATCATCGAGTTGGAGAAGCGCTTCCACCGGCAGAAGTACCTGGCGTCGGCCGAGAGGTCGGCCCTCGCCAAGTCACTCAAGATGACGGACGCCCAGGTGAAAACTTGGTTCCAGAACCGACGCACCAAGTGGAGTTTTTTTCCGCAGCGACTGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCTGCTGCTTGGAGCGTGTGGTTCTGGATCTGGTTCTGGTTCTGGTGCTGGTGCTGGTTCTGGTTCTAGTTCTGGTTCTGGTGCTGGTGCTGGTTCTGGTTCTGGTTCTGGTTCTGGTTCTGGTTCCTGTGGTTGTGGCGGTAGCGGTTCTGGTGGCGGTGGCGGTGGCGGTTCTGGTGGCGGTGACGGTTCTGGTGGCGGTTCTAGTGGCGATGGCGGTGGCGGTTCTCGTGGAGGTGGCGGTTCTGGTGGCGGTTCTAGTGGCGGTTCTAGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGTGGTGGTGAAGGTGAAGGTGACGGTGACGGTGACGGTGAAGGTGAAGGTGAAGGTGAAGGTGAAGGTGAAGGTGAAGGTGACGGTGACGGCGACGGCGATGGCGATGGTGATGGTAATAGTGAGTATGAGGAGAAGGAGGAGGAAGGTGAGGAGGACGATGGGGACCCTTAGGATGATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGAAGGTGAAAGTGAAGGTGACGGTGACGGTGACGGTGACGGTGAAGGTGAAGGTGACGGTGACGGCGACGGCGACGGCGACGGCGACGGCGACGGCGACGGCGACGGTGACGGTGATGGTGATGGTGATACCGATCAACGTGTCAATGAAGGAACTTTACGGCGCGTCGTTTTGCCGGGCGGTTGGCCGCCGGCGGAAGCGGCGGTGCGCGATCAAGCGGAACGGTTTCATGTCGTACTTATTCGACACGGCCATGTCGAACTTCATTAGGCTGGACAATGTGACGGTGCGTCAGACGGCGGAGGAGCGCGAGGCGGAACGACAGGCCGCCAACCGCTTCATGCTGTCACTGCAGGCGGAGGCCGGCAAGACCCTGTACGGTGGCACGGGCGGCCCCGCGGACCCGCTCTGTCTCAACAACGCCTCCTTGCACGCCCTGCAGAACATCCAGCCCTGGCGGGAGAGCGTGGACGACACGGGCCCCGCCACGCCGGACCAGCACCGGCACGCCAACGACTTCCACCTGGTCGCCACGTCGGTGGCGGCGCAACGGCCCGCGCCGTCGCTCGTGTGA

Transcript

Lsat_s099.g0042.t1

ATTTAGCTCTACGGAGCGCAATGATTCGGGAAGAAGCAATCGCCAGCGATCCGGATAGACAAAGGGGCGGGGTCAACGACAACGGCCCTGACCAATCATCGGCGAGCGATGTCGGCCCGACGTCGGCCGATGCATGTGCGATGCTCTTCGGCAGGGAAATTTCTCTGGTAACAGACGCTCCTATATCACCACGGCTACGTTCGCGGCACCTGTACATAGTTACGATATTGACTTGTAGTGATCCACTGTTTCGCGTCGTTGTCAAACTTCCCATCGTTATGACGAGAGACCACAAGGCGGACTGCGACAGTTGTCAGAGCGGCGACGATGACACGGCGACATCGTCTCTGTCACGATCGCCAGCGCCGTCTTCTCCGTGCTCCATGTCGTCTTCGTCGTCGTCGATGTCACCCGTCACTGTGCCGACCAAGTCGACGTCACAGACTCTGTCGTTCGGCATCAGTCGAATACTGGACGACTCGCCTCGGAAACCAGCGCCTTTCCCCCAAGTCACGTTTCCTTTTCCCCACCGGGAACAGCCCTATCCCAACCCGGGTATAGGTAATGGGATTCTCGCCTCGTCGGCGGCCTTTCTCGGGGCGGCGTCGATGTCCTGTTTCCCGGCCGATGGGCACCGCGCTCAGACGACTTCCCCGGGCGTGATCAAAGTCCCGGCACACCGTCCCGGTTCCATCGTCCATTTCCCGCCGTTCCCAGCGTCAACAATGTTTCCCTGGATGGCGGACCGGAAGGACGGGCTAACGGTGACGCGACGTATCGGCCATCCGTACCAGAACCGAGCACCTCCGAAACGGAAGAAACCACGGACGTCGTTCTCTCGTCTACAGATCATCGAGTTGGAGAAGCGCTTCCACCGGCAGAAGTACCTGGCGTCGGCCGAGAGGTCGGCCCTCGCCAAGTCACTCAAGATGACGGACGCCCAGGTGAAAACTTGGTTCCAGAACCGACGCACCAAGTGGAGTTTTTTTCCGCAGCGACTGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCTGCTGCTTGGAGCGTGTGGTTCTGGATCTGGTTCTGGTTCTGGTGCTGGTGCTGGTTCTGGTTCTAGTTCTGGTTCTGGTGCTGGTGCTGGTTCTGGTTCTGGTTCTGGTTCTGGTTCTGGTTCCTGTGGTTGTGGCGGTAGCGGTTCTGGTGGCGGTGGCGGTGGCGGTTCTGGTGGCGGTGACGGTTCTGGTGGCGGTTCTAGTGGCGATGGCGGTGGCGGTTCTCGTGGAGGTGGCGGTTCTGGTGGCGGTTCTAGTGGCGGTTCTAGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGTGGTGGTGAAGGTGAAGGTGACGGTGACGGTGACGGTGAAGGTGAAGGTGAAGGTGAAGGTGAAGGTGAAGGTGAAGGTGACGGTGACGGCGACGGCGATGGCGATGGTGATGGTAATAGTGAGTATGAGGAGAAGGAGGAGGAAGGTGAGGAGGACGATGGGGACCCTTAGGATGATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGAAGGTGAAAGTGAAGGTGACGGTGACGGTGACGGTGACGGTGAAGGTGAAGGTGACGGTGACGGCGACGGCGACGGCGACGGCGACGGCGACGGCGACGGCGACGGTGACGGTGATGGTGATGGTGATACCGATCAACGTGTCAATGAAGGAACTTTACGGCGCGTCGTTTTGCCGGGCGGTTGGCCGCCGGCGGAAGCGGCGGTGCGCGATCAAGCGGAACGGTTTCATGTCGTACTTATTCGACACGGCCATGTCGAACTTCATTAGGCTGGACAATGTGACGGTGCGTCAGACGGCGGAGGAGCGCGAGGCGGAACGACAGGCCGCCAACCGCTTCATGCTGTCACTGCAGGCGGAGGCCGGCAAGACCCTGTACGGTGGCACGGGCGGCCCCGCGGACCCGCTCTGTCTCAACAACGCCTCCTTGCACGCCCTGCAGAACATCCAGCCCTGGCGGGAGAGCGTGGACGACACGGGCCCCGCCACGCCGGACCAGCACCGGCACGCCAACGACTTCCACCTGGTCGCCACGTCGGTGGCGGCGCAACGGCCCGCGCCGTCGCTCGTGTGACCGACAACGACATCGGGGCAACGTCGGGTTGCGACGTCCGGGGGACGATAACGAAAGGATGGATGTGCATCGATGTCGTGCTGCAGGGAGCAGGGGACTCGCTTCTGCTCGCGTCGTCCTTCAATTAACTCACCAGTTCTTCCACATCCAACGTCCTGTCATACAACTTCCTCTCTTGCCTCCTGTTTTGCTACGTAAGTT

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR042247	Family	T-cell leukemia homeobox protein 1/2/3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45921	IP01054P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0048513	Biological Process	animal organ development	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-