Gene detail

Detailed information of Lsat_s095.g0051.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s095.g0051.t1	SUCCINYL-COA LIGASE SUBUNIT ALPHA	Lsat_scaffold095	1334146	1346630	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s095.g0051.t1

TCTAACATCCGCTTCAAAGATGGCGGTCAACGCGAGCTGTGGACTCTTACGTCGGCTTGCCGCAAGCTCGCTGATTGGTGTTAGACAATGCAGTTATGCAGCATCAAGAAAACACATGTTAATAAATAAACACACCAAAGTCATATGCCAAGGTTTTACAGGAAAACAGGGCTCATACCACAGTGAGCAGGCATTGGAGTATGGCACCAACATGGTGGGGGGCGTGTCTCCGGGCAAGGGAGGCAAGATGCACCTTGGACTGCCCGTATTTAATACAGTCAAGGAGGCAAAGGAAGCGACTGGAGCGGATGTAACGGTCATCTATGTGCCCCCGCCCTTCGCAAAGGATGCCATACTCGAGGCGGTCAATGCCGAGGTCGGTCTGATCGTGTGTATCACTGAGGGGATTCCCCTGCATGACATGGTGCGGGTCAAGTACAAGCTGGTCAGGCAGAGCCACTCCCGACTCATTGGACCCAACTGTCCTGGCATCATCAAGCCTGGAGAGTGTAAAATAGGCATCATGCCTGGACACATCCACAAGCCAGGCTCCATAGGTATTGTGTCAAGGTCAGGAACTTTGACCTATGAGGCAGTGCAGCAGACGTCAGACGTTGGTCTTGGCCAGTCTCTCTGCGTTGGTATCGGCGGTGACCCGTTCAACGGCAGTGACTTCATCGACTGCCTCAGTGTGTTCCTCAATGACCCACAGACAGACGGTATCGTGATGATTGGTGAGATAGGAGGGGAGGCGGAGGAGATGGCAGCCAAGTTCCTCACTGAGAACAATTCTGGGCCAAACAGGAAGCCGGTGGCTGCATTTATCGCTGGTATGACCGCGCCCCCAGGCAGACGGATGGGGCATGCTGGGGCGATCATTGCCAGGGGTAAGGGTGGAGCTCAGGAGAAGATCCAAGCACTGAAAGATGCTGGTGTCGAGGTGACAATGTCTCCTGCTCAGATGGGAACTACAATCTACAAGGCCATGGTGAAGGCTAGAAAGGCCTAGAGAGAGAGGACACTCCTATAATGTGTGACTCCGTAGAGAGACTGGCACTGCGCATTCACAACCTAACATAGCAGCAAGCAACTGGCAATCACAACATTCTGATAAAAGAACAAGAAGGAAATAATGGCAGTGTTTGTAAATGTTAAATCCACTTTTGAGTTTTGATTGTGTCCAAAATGATGGCATGTAGAGCTGTGCAATTTATATCAAATAAAGCTCATTATTCCAAGTTTTCCAGTCCAATGATGTGATGTTTGGCACACGAAGATATTGACCAGTGATCACAGTAAGAACATGACAAAATCCGAATTTCCATCTGAATGTTCTGCAGGTTACCACCAGAGATGGACGCTTTCTAGCAAGTCTGTCCGAGCACATAAAACTGTCTAGTGCTAGTGTAATATTGTTGGAAACTGCATGCTTCTGGTTATTACGTGATGTATTAACTTTCAGTGGTCATAATTTAAAGACACAGATATAATATAATCCAACAATGTATTTTATGGAGAAGAGTTTCGAGTCGTCATCTATGTTAACAAAGATCTCGCAGTCAGCACAAGAACTCCATTTGTACACTGTACCTGTGGCACTGGTGAATATGCATTTGATGTAAACATGGAAATTGTAGTATTCACCATTGCATGTTTGATTGGCCAGAATTATTATTTATTGTTAATGGCGGTGCATAAGAGAAAGGAATCTCTTATGACTATGTTCATAACCACCGATGTGTACACAAATGGAACTGTCATTTTTTAGATTGCAATTATATTTGTGCATTCAAGGATTGAAAATGTTTATTCAGTTTGTTTCGTCTGGTCTGCTTCAACACGTCCTAGAGAGTTTGTGTCCCATCTTTCTGATGGAGATAGCAAGCTGCATATGCAAACATTGCTGGAAAGATTTTTAAATAGTTGTATTGTCCTGGAGAGTTCACCTTGCTAACAACGCGTGTCACGTCTATGTGTCCCCACTGCAGAATTCATCTGATGGCAGTCGGATAACACTAAATCAGTTGTTACTGATTTAGTGTTTTTTTGTGACTTCATGGTATTTACGACATTTTCTAATTGCTGTTTGTGGTTAAAAACAGGTCGATTTGGGTAAAAAAAACATGAAAATCTTGTTTGCTGTAAAATATGCTATTGTATGCTAAAGTATTGTTATTGTTTCGTTCATGCACAGTTTACACTGGTGCTGGCTTAGTTTAGGTCTGCCCTGGGCATCTGCCTTGAGTTTGATGCAGTTATCTTAAGGCAATGGAACCTCTATAACTACACTTTCTTTTCTCAGCATTTCAACAGCTATAGGTGCACAACAGTTACTTTCAATTCAATATATGAATGTATTAATTACCCTATTGATCACACAAGTTGTATGCCAATAAAAAAGGACTATCAAATGCCAAATTGTTGCAATTATGCAAACGTCAGTGTTCAACATGACAGAATTAGCTCAAATGTGATGCTTTGTATCAACAGGATGCACGATAGTTGAAATTACAGCCAAGTAGAATATCTACGTATAGACTGCAACGTCATGTAGTTGAGATGACGCTCTTCTATAAGTTCTCAATCGGCCATAACCATATAAAATATTGGTGATTAGGCTGCGCTGTTCAAGTAGGTTCAGTGTTGCTCACTGCAACTACAAACCAAAGGTATTGAATTGCTTTGTGTGGTGACAGACTAGCTGTGTTTCCATGTCCTAACTAGATAAATTGATCGACAAACATCACAAAACAAATCAGCTACCTTTATTCTTTGTAGAAAACATGACACTAGATACGAGTGTGTTGTACCGTCGTCGTTGTAAAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00549	Ligase_CoA	CoA-ligase	Domain	Interproscan
PF02629	CoA_binding	CoA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003781	Domain	CoA-binding	Interproscan
IPR005810	Family	Succinyl-CoA ligase, alpha subunit	Interproscan
IPR005811	Domain	ATP-citrate synthase/succinyl-CoA ligase, C-terminal domain	Interproscan
IPR016102	Homologous_superfamily	Succinyl-CoA synthetase-like	Interproscan
IPR017440	Active_site	ATP-citrate lyase/succinyl-CoA ligase, active site	Interproscan
IPR033847	Conserved_site	ATP-citrate lyase/succinyl-CoA ligase, conserved site	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11117	SUCCINYL-COA LIGASE SUBUNIT ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004775	Molecular Function	succinate-CoA ligase (ADP-forming) activity	Interproscan
GO:0004776	Molecular Function	succinate-CoA ligase (GDP-forming) activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006099	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0009361	Cellular Component	succinate-CoA ligase complex (ADP-forming)	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-