Gene detail

Detailed information of Lsat_s092.g0017.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s092.g0017.t1	RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF	Lsat_scaffold092	381256	408440	+

Gene Structure

More details in Jbrowse Sequence

CDS

Lsat_s092.g0017.t1

ATGAACCGAGTTCGGGACGGCCATAAGTTCTACTTCAATGCCCACCAGATGGCGTACTCATGGGAGAAGACAGAAGAAATGAAGAAAGACTACTCTATCTTGACACGAGACGAAATACAGACGTGTCTTTCAGCTGTCACTGCGACCTACGATCGTGAACTGCTGTTCCAAGCAAACGAGAAGTTCATTGTCATGATTCAGTCACGAGTGCGCGGTTACCTCGCCAGGAAACAGTACAACGAACGTGTCAACTTCATGCAAACCCAGCTTCCTGCCATCGTCAGGCTGCAGGCATGGTGGCGTATGGTGAAGCAGAAGAAGAAGTATTCTGACAGATTGAGCTACCTGCAGAATAACGAAGATGCTGTTATTAAGCTGCAAGCGCAGACCAGAATGCACTTGGCTCGAAGTCGGTACCAAGATCGACTCCAATACTTCAGGGATCATGAGGATGCTGTCGTGAAGATCCAGTCCTACATGAGGTCAAACTGGGCGAAGAAAGACTACAAGGCTTTGATGTACGGGGAGAAACCAGCCATCACTGTTGTGCGTCGGTTTGTCCACCTACTGGACATTGGAGACATCGACTACAACGAGGAAATCGAGTTGCAGAAGTTGCGTCAGCAAGTTGTGACGGACATCCGGTCAAACCAGCACCTCGAGGCTGACCTCAGTCAGATGGACATCAAGATAGGATTGCTTGTCAAAAACAGAATAACACTACAGGATGTCGTGTCACATCACAAGTCTCTGAAGAAGTACCGAGAGAACTCCTCGTCATCACTGGCTACGGCGCAGCAGCTCGGACTGCGCGCATTCACAAAACAGAGTCGGGAACGTCTTGAAGCATACCAGCACCTCTTCTACCTGCTACAGACGAACCCTGTCTACCTTGCCAAACTCATCTTTGAGGTGCCTCAGAGCCGCACCACAAAGTTCATGGAGTCGATGATACTCACGCTGTACAACTACGCGTCAAACCAGCGAGAGGAGTTCCTTCTCCTGCGGCTCTTCGAGACGGCACTCAAGGAGGAGATTAGTTCCAAAGTGGACAAAATGAGTGACCTAGTAACGGGCAACCCGATGGTGGTCAAGATGATCGTTGGATTCAACCGAAACACCCAGGGCCAGGGGCACTTGAGAGAGCTACTTAACCCCCTCGTAAAGAATATAATCAACGACAGAAACCTACTGATCAACACAAACCCTGTCGACATCTACAAGAAGTGGGTGAATCAGACGGAAACAGAGACAGGACAAGCCAGTCGTCTTCCCTATGACGTGACTGTGGAACAGGCTCTGGAGTACGAGGCTGTCCGGGAACGCATTGCCCAGTCAATACAAGCTCTAAAGAGTTCAACAGACATGTTTCTTGAGTCCATCTTCAAAAATGTCGACAAGATTCCGTACGGGATGCGGTACATGGCAAAGGTCATGAGGGAAGCATTGAGCGTTAAGTTCCCTCAGGCATCTGAGAAGGACGTTCTCAAGATTGTTGGCAACCTTATATACTACCGCTACATCAACCCAGCGATTGTGTCACCTGACGCATTCGATATCATTGATGTCAGCATGAGTAAAGGCCTCTCAAATGACCAGCGTCGTAATCTTGGGTCTGTGGCGAAGATCCTGCAGTTTGCTGCATCCAACAAGGGATTTGGTGGAGACAGTCAACACCTGTCAGTGCTGAACCCATACATCATTGAAACACACAAACGCTTCAAACAGTACTTCATAGAGGTGTGTGACGTTGTCGATCCGGAGGTTCGCTTCAATGTAGACCAGTACACGGATGTGACTCGGGTGACAAAACCTGTCATCTATATCTCTCTCTCCGAACTCAGCAACACACACAAGCTTCTGCTGGAGCACCAGGACAAGATAGCACCAGATTCTAACGATCCACTTCATGAATTACTTGAAGATCTTGGAGACGCACCAGACATCGAGTTACTCGTTGGTGAGGCAAGCAGCGATGACGATGCTGCATCCAAGGCACAGATGGAGAAGACAGAGATCTCGTTGACACTGTCCAACAAGTTTGAGGTTCCGGAGCACGAGCAATCAGATGTCCACAGTCAACTCATTAGAACAAAGAGAATGTTGGTCGACGTCATTCGCTGCCAGTTGACAGGAGACAATCTTCCTCAAATCCTCAACTGTCCTGCCACGGAAGAGGAGGAGAACACACATCAGGCGTTGATCCAGCGGCGCGATCGTACAGACCAGAAGGCCATCACCAAGACGGGAAAACTTGTTCGCAATCAGTCCATCGTTGGAGACTCAAGGTTGCCCCTGGAGACAATGAAGGAGAAGATACGACGTCATCTGGAGAACCTAGAGAAAGCCGGAGTCGTGTCCCGCTCTGACAATTACCAGTCTGTTATCAACTCCATTGTACAGGATATCCGCAACCAGCGCCTGTATCGCCAGCGTCGGAAGCAGGAGATGGTACGACTGCGTGCCACTCTCAAGAATCTCGCCGCGAAACGAGCGTTCTTTCAGGAACAGGTCGATTACTACAACCAGTACGTGAAGACTTGTCTCGACAACCTGTCGACCAAGGGAAAGAAGTCGGGCAGGAAGTCGATGTTGTTCAAGCGCCATTCTGGCTCAGCAACAAAGGGTTCGATCAAGTACAGTGCAGCAAAACTGCATGAGAAAGGAGTCATTCTCGAGATCGAAGGACTCGCAATTAACCAGTTCAAGAACGTGCTGTTCGAAATTAGTTCCACAGAGACAACTGGGGTATTTGACGTCAACGCCAAGTTCATGGGAGTCAGCATGGACAAGGTGGAACTAGTGTTCCAAGATCTCCTACAGCTCCAGTATGAGGGCGTCGCCGTCATGCCAATGTTTGACAAGGCAAAGATCAATGTCAACCTCCTCATCTTCCTGCTCAACAAAAAATTCTATGGCAAATAA

Transcript

Lsat_s092.g0017.t1

CAGAAGTGGTTGGACGATGAACCGAGTTCGGGACGGCCATAAGTTCTACTTCAATGCCCACCAGATGGCGTACTCATGGGAGAAGACAGAAGAAATGAAGAAAGACTACTCTATCTTGACACGAGACGAAATACAGACGTGTCTTTCAGCTGTCACTGCGACCTACGATCGTGAACTGCTGTTCCAAGCAAACGAGAAGTTCATTGTCATGATTCAGTCACGAGTGCGCGGTTACCTCGCCAGGAAACAGTACAACGAACGTGTCAACTTCATGCAAACCCAGCTTCCTGCCATCGTCAGGCTGCAGGCATGGTGGCGTATGGTGAAGCAGAAGAAGAAGTATTCTGACAGATTGAGCTACCTGCAGAATAACGAAGATGCTGTTATTAAGCTGCAAGCGCAGACCAGAATGCACTTGGCTCGAAGTCGGTACCAAGATCGACTCCAATACTTCAGGGATCATGAGGATGCTGTCGTGAAGATCCAGTCCTACATGAGGTCAAACTGGGCGAAGAAAGACTACAAGGCTTTGATGTACGGGGAGAAACCAGCCATCACTGTTGTGCGTCGGTTTGTCCACCTACTGGACATTGGAGACATCGACTACAACGAGGAAATCGAGTTGCAGAAGTTGCGTCAGCAAGTTGTGACGGACATCCGGTCAAACCAGCACCTCGAGGCTGACCTCAGTCAGATGGACATCAAGATAGGATTGCTTGTCAAAAACAGAATAACACTACAGGATGTCGTGTCACATCACAAGTCTCTGAAGAAGTACCGAGAGAACTCCTCGTCATCACTGGCTACGGCGCAGCAGCTCGGACTGCGCGCATTCACAAAACAGAGTCGGGAACGTCTTGAAGCATACCAGCACCTCTTCTACCTGCTACAGACGAACCCTGTCTACCTTGCCAAACTCATCTTTGAGGTGCCTCAGAGCCGCACCACAAAGTTCATGGAGTCGATGATACTCACGCTGTACAACTACGCGTCAAACCAGCGAGAGGAGTTCCTTCTCCTGCGGCTCTTCGAGACGGCACTCAAGGAGGAGATTAGTTCCAAAGTGGACAAAATGAGTGACCTAGTAACGGGCAACCCGATGGTGGTCAAGATGATCGTTGGATTCAACCGAAACACCCAGGGCCAGGGGCACTTGAGAGAGCTACTTAACCCCCTCGTAAAGAATATAATCAACGACAGAAACCTACTGATCAACACAAACCCTGTCGACATCTACAAGAAGTGGGTGAATCAGACGGAAACAGAGACAGGACAAGCCAGTCGTCTTCCCTATGACGTGACTGTGGAACAGGCTCTGGAGTACGAGGCTGTCCGGGAACGCATTGCCCAGTCAATACAAGCTCTAAAGAGTTCAACAGACATGTTTCTTGAGTCCATCTTCAAAAATGTCGACAAGATTCCGTACGGGATGCGGTACATGGCAAAGGTCATGAGGGAAGCATTGAGCGTTAAGTTCCCTCAGGCATCTGAGAAGGACGTTCTCAAGATTGTTGGCAACCTTATATACTACCGCTACATCAACCCAGCGATTGTGTCACCTGACGCATTCGATATCATTGATGTCAGCATGAGTAAAGGCCTCTCAAATGACCAGCGTCGTAATCTTGGGTCTGTGGCGAAGATCCTGCAGTTTGCTGCATCCAACAAGGGATTTGGTGGAGACAGTCAACACCTGTCAGTGCTGAACCCATACATCATTGAAACACACAAACGCTTCAAACAGTACTTCATAGAGGTGTGTGACGTTGTCGATCCGGAGGTTCGCTTCAATGTAGACCAGTACACGGATGTGACTCGGGTGACAAAACCTGTCATCTATATCTCTCTCTCCGAACTCAGCAACACACACAAGCTTCTGCTGGAGCACCAGGACAAGATAGCACCAGATTCTAACGATCCACTTCATGAATTACTTGAAGATCTTGGAGACGCACCAGACATCGAGTTACTCGTTGGTGAGGCAAGCAGCGATGACGATGCTGCATCCAAGGCACAGATGGAGAAGACAGAGATCTCGTTGACACTGTCCAACAAGTTTGAGGTTCCGGAGCACGAGCAATCAGATGTCCACAGTCAACTCATTAGAACAAAGAGAATGTTGGTCGACGTCATTCGCTGCCAGTTGACAGGAGACAATCTTCCTCAAATCCTCAACTGTCCTGCCACGGAAGAGGAGGAGAACACACATCAGGCGTTGATCCAGCGGCGCGATCGTACAGACCAGAAGGCCATCACCAAGACGGGAAAACTTGTTCGCAATCAGTCCATCGTTGGAGACTCAAGGTTGCCCCTGGAGACAATGAAGGAGAAGATACGACGTCATCTGGAGAACCTAGAGAAAGCCGGAGTCGTGTCCCGCTCTGACAATTACCAGTCTGTTATCAACTCCATTGTACAGGATATCCGCAACCAGCGCCTGTATCGCCAGCGTCGGAAGCAGGAGATGGTACGACTGCGTGCCACTCTCAAGAATCTCGCCGCGAAACGAGCGTTCTTTCAGGAACAGGTCGATTACTACAACCAGTACGTGAAGACTTGTCTCGACAACCTGTCGACCAAGGGAAAGAAGTCGGGCAGGAAGTCGATGTTGTTCAAGCGCCATTCTGGCTCAGCAACAAAGGGTTCGATCAAGTACAGTGCAGCAAAACTGCATGAGAAAGGAGTCATTCTCGAGATCGAAGGACTCGCAATTAACCAGTTCAAGAACGTGCTGTTCGAAATTAGTTCCACAGAGACAACTGGGGTATTTGACGTCAACGCCAAGTTCATGGGAGTCAGCATGGACAAGGTGGAACTAGTGTTCCAAGATCTCCTACAGCTCCAGTATGAGGGCGTCGCCGTCATGCCAATGTTTGACAAGGCAAAGATCAATGTCAACCTCCTCATCTTCCTGCTCAACAAAAAATTCTATGGCAAATAAGCGAACAGTTGACGTGATTAGTTGCTGAGCCAGCATCGTCATCACAGACAATAACACCAAGTCAGCTAAAGACGCAACCACTGCCACTGTTACGGCAGCCATACTGATGCTGCAGAAAACTAGTTCTGTAGCACATGAAAGTGTTTTGATTGGAGAGTTATAAGTTAGCTACTGATGTTATTTTCATGAACAGAATTGATGCTTCTGGTGAAAGGTGCGTTTTATTGCAAGCGTTCCGAGCCATTTTTATACAACTGTCTGCTTAGAACTACAAGTTGTAGCGAGACTAGTCGGTAGTGTAGGCTGTTGCACTAGAGACAGTGTGAAAGGAAATCTCAACAGAGACCTGAAGTCTTGCTCCAGGTCGTTCTGCATTTCTACATGAACTGCATAGGGCAACGACCTACCCATTAGCTGCATAGGGCAACGACCTACCCATTAGCTGCATAGGGGAACGACCTACCCATTAGCTGCATAGGGGAACGACCTTCCCATTAGCTGCATAGGGGAACGACCTTCCCATTAGCTGCAGAACTTATTTGTCTTCTGCACCGATTTACATCACAATTTCTACAGGAGTGCATGTGATGTTGTCACAACATGAAAGCCACACATATGTTGGCTGAATAACTGTCAGTGGGCAGCTCTTAGAGTTTGGAATATTTTATTGGGCTCTGGGATAACAGCAGCTCTTGGATGTTTCCCCAAATAATTATATCCCAAATCTGCTACATGAACATTTGTAAATATAAAACAAGTTTTGTTCTTCAGCATGTACAGGGTCAATATGCACAACATTTCCTTGCCATTTTTTTTCAACTGCAGCTGTGGCGAATACTGAATGGACAGTTATGTAAGTGCTAGTTAATTATTGGTTGATTATGTCTTCAGTGCTGGTTACTGATTGGTTGAATATATCTCCAGTGCTGGTTACTGATTGGTTGATTATATCTCCAGTGCTGGATACTGATTGGTTGATTATGTATCCAGTGCTAGTTACCGATTGGTTGTCTCCATTGCTGGTTACTGATTGGTTGATTGTTGCATGCATGTGACATAAAAAAAATGGTTTTATTCCTTTTTTGCTGTATACTGTCAAAACAACACTGTTGTTGTGATCATTCCATTTAAAAAAAAACTAGTAGATTGTGTTGCTTTACTGAAACTTGTATTGCTACATAATTTTGAATCAATGTTAAATGTTGTCACTGATAAAGATACCTGGTGGAAAGTAATTATGACCATTATGATTATTGCACAGTTTAGAAAATGGTGCCTATTTAAATCAAAATAATGCGTGTTCACATGTGAAATCAGGTAAAAAAAATTATTAACAAAAATTCTTGCTCAATAACATTAGAATCATGTGATGGCAAATTATTTATTGATCAATCATGACTAGACATTCAAATCAAGTGGCGTGTTCAGTTTGTAGCCAGAAGGCTTTGTCCAATCATGAGAGCCATTTTGGGAGGTAAAATTCAATGGTTGATTATTAATGTAAATATGCTGCATAAAAGAATGGTTATTAAATATAACGTTATTCCCTGCTGATTAGGTTGCTATGCATTACTTTCAATTGTATCTATGTCTTCCATTAAAGTCGAGTTGATGGAAAAACATTAAAATAAAATGTTGCACTTGCATATGACACATATTTATATGATTGGTGTTTCATGGTCACATTTGCACTTTTCCTAATACCTCTTGGATTTTAATTGAGCAGCCAATATGCTTTACTACTTGTCATAAATGCGTTTTATTTAATTCCGGTAGTACATTTCTTGGAAACACTACAAACATGATAGTAAAAATGCATTAACAACAGGAGTTAAGAACATATTTCTTTCCCACCCATTTATTAAATACCTGTGGAATTACAACCTGTAGTATCAACAATTACAATGTTTGTAATAACAGAGTGTCTATTACAGTGGACGGTGTAACAGAATCGGCCATTAAATAGAATAAAATGTTGGCCAGAGTGCACCACTATAATGAAATGCGCTATTTTTGGCTGCATTGAAGCATCAGTCCGCGGGCGGGCATACATAGTAGACATGAGCCTTCTCACTGGATAATCATAAATCAACTGTGTAACTTTCATTAATACAAACAATGGCGACAAAAAGAAAGTCAAACATCCAGTTCCTATTCCAACTAATATAAATAAATCAAATATTAGTGGGGTATATTTTAATGCAATCACACATGTGTATCCAGAACCATGCCGAATTACTGTCATTAGTTCTGTACTGTGAATAATTTCTGAATCACAGGCTACTACAGCAAGTCAAATGCTGTGAAGGCCGCATTAAACCTACTGTGTGTAGTATTAAATAATAATATGCACAAACGGCGCAAGTGTCTATGTAGGTTTCTACATAGACACACACTACAGTTTTAACATTGTATATATCCTCGTCTTCACAGCATTGAACTTTGTCATACTTGAGAGTAGAAAAAACATTTTTTTTAACAATAAAAATGTACTGTTTTCTAAGGAAAAGTTTTTCCTAATTAGTACTTGATAGATATTATGGTATACATGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00612	IQ	IQ calmodulin-binding motif	Motif	Interproscan
PF00616	RasGAP	GTPase-activator protein for Ras-like GTPase	Family	Interproscan
PF03836	RasGAP_C	RasGAP C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000048	Binding_site	IQ motif, EF-hand binding site	Interproscan
IPR000593	Domain	RasGAP protein, C-terminal	Interproscan
IPR001936	Domain	Ras GTPase-activating domain	Interproscan
IPR008936	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR023152	Conserved_site	Ras GTPase-activating protein, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14149	RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005516	Molecular Function	calmodulin binding	Interproscan
GO:0005938	Cellular Component	cell cortex	Interproscan
GO:0043087	Biological Process	regulation of GTPase activity	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan
GO:1903479	Biological Process	mitotic actomyosin contractile ring assembly actin filament organization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-