Detailed information of Lsat_s090.g0054.t1 in Lamellibrachia satsuma Gene info
Gene IDAnnotationScaffoldStartEndStrand
Lsat_s090.g0054.t1WD REPEAT AND HMG-BOX DNA BINDING PROTEINLsat_scaffold09012021461238844-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Transcription Factors FamilyHMG
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF00505HMG_boxHMG (high mobility group) boxDomainInterproscan
PF12341Mcl1_midMinichromosome loss protein, Mcl1, middle regionRepeatInterproscan
PF20946Ctf4_CDNA polymerase alpha-binding protein Ctf4, C-terminal domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001680RepeatWD40 repeatInterproscan
IPR009071DomainHigh mobility group box domainInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR022100DomainMinichromosome loss protein Mcl1, middle regionInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR036910Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan
IPR048591DomainDNA polymerase alpha-binding protein Ctf4-like, C-terminal domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR19932WD REPEAT AND HMG-BOX DNA BINDING PROTEINInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000278Biological Processmitotic cell cycleInterproscan
GO:0003682Molecular Functionchromatin bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006261Biological ProcessDNA-templated DNA replicationInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0043596Cellular Componentnuclear replication forkInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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