Detailed information of Lsat_s089.g0026.t1 in Lamellibrachia satsuma Gene info
Gene IDAnnotationScaffoldStartEndStrand
Lsat_s089.g0026.t1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATEDLsat_scaffold08912029951220489+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00533BRCTBRCA1 C Terminus (BRCT) domainFamilyInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF13637Ank_4Ankyrin repeats (many copies)RepeatInterproscan
PF14835zf-RING_6zf-RING of BARD1-type proteinDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001357DomainBRCT domainInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR036420Homologous_superfamilyBRCT domain superfamilyInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR039503DomainBARD1, Zinc finger, RING-typeInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR24171ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATEDInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0031436Cellular ComponentBRCA1-BARD1 complexInterproscan
GO:0070531Cellular ComponentBRCA1-A complexInterproscan
GO:0085020Biological Processprotein K6-linked ubiquitinationInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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