Gene detail

Detailed information of Lsat_s089.g0020.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s089.g0020.t1	TELOMERASE REVERSE TRANSCRIPTASE	Lsat_scaffold089	934986	1010084	-

Gene Structure

More details in Jbrowse Sequence

CDS

Lsat_s089.g0020.t1

ATGTGTAACAGCAGCGGAAAGGTCAGGAATCAGAAAGCTCTCAAATTTGTGAAAGAACAAGACCTTTGCAGTATGTCATCACATTTCAGTCAAAAGCGAGTGCGTCGAATCTTGAGTCACTTCTACGTGACAGTAGAGACCCTGGAAGAAGCTGTCACCGCTACAGATGTGACAGGACAGCATGGTGACACGCTGCTCCAGTCTGGTGACAAAGACAGCTACGTTAAATTGATCAGAAATACCTTTGTGGCGACTCCAGCACAAGCCAAGGCCCCGTCACATGACCTGGCCGATTCACCCCACACCGGTACACGTGATCTGGTCGTCACACTGATCGAGAGACTTCACAAGAGGGATGTCTTTCCGCTGCGGAATGTTCTCACTCTGGGATTTCAAGAGCTGTCGGGCGACCCAATGGCCCAGGTGTGCAGTGGAGCGTCCGTAGAACTGATCTACCCGAGTCACAGTCTCAGCATGTTCTACACCAGTCAGTGGCGCACCCTGCTGGAGAGGGTTGGCAACAAGAGACTGATGTATCTACTGGAAAACAGGGCGTTCTTTGTTGTGGTTGCCCCTAGCAACTACCTCCAGGTTGCAGGTATTCCTATCTATGAGTTGTGGCCGTTGCAAGACAAAATGGCTACAGTGGCTCATCCTGGTGGCAAAGTTGTGCATCGAAGAAGAGTTGACAGAGTGAGGAGAGTCACTGAACGACAGAAGAGAAAGAGGAGAAGAATTGTGAGAGAAATAACCGGTGATGTGACAAATGACAAAAAAATTACATGTCACAGAGGGATAAGTGAAACTGTGACAAATGACATTAGTGTGACTTGCCAGAATGTGGCCGGTGATGTTGCAATATATGATAACATTGTGACAAATGACAACAATGCGACAAATAACAACATTGTGACAACTGACAACAGTGTAACACGTGACAGTGATATGAATGACCACAGTTTGACATGTCACAAAGTAGTGAAAGGTGCCACAACGACCAATGAAAAGAAAGTGACCAGAGACATTGCACTAGATCACAACAGTGTGACAAATGCCAGTAATTTGAGTGACAACAATTTAACTTGTCACAGATCAGTGACAGTTAAGAGTGTGGCATATGACAACAGTGTTACCTGTCCCACTATGACAAACAGTTTGACAGTTGACAATGTTACTACTCGCAAAGTGACATGTGCTAGCATGTCATGTGACAATATGACACTCAACTGTATCACTGACACAGAGTTGACACAGACACGTGACATGGGACATGTATCACTGCTTCCAAGGAAACGATCTTGTGGCATGTCATGTGACAATATGACACACAACTGTATCACTGACACAGAGTTGACACAGACACGTGACATGGGACATGTATCACTGCTTCCAAGGAAACGATCTTGTGGCATGTCATGTGACAATATGACACACGACTGTATCACTGACACAGAGTTGACACAGACACGTGACGTGGAACGTGTATCACCACTTCCGAGGAAACGATCTTGTGGCATGTCATGTGACAATATGACACACAACTGTATCACTGACACAGAGTTGACACAGACACGTGACATGGGACATGTATCACTGCTTCCAAGGAAACGATCTTGTGGCATGTCATGTGACAATATAACACACGACTGTATCACTGACACAGAGTTGACACAGACACGTGACATGGAACATGTATCACCACTTCCGAGGAAACGATCTTATGGCATGTCATGTGACAATATGACACACGACTGTCTCACTGACACAGAGTTGACACAGACGCGTGACATGGGACATGTATCACTGCTTCCAAGGAAACGATCTTGTGGCATGTCATGTGACAATATGACACACAACTGTATCACTGACACAGAGTTGACACAGACGCGTGACGTGGGACATGTGTCATCACTTCCAAGGAAACGATCTTGTGACACTTTGGAAAACATGGGAAGCAGCAGGGGAGGAGGGAGAGGGAAGGGAGAAGGAAGGACTGGGGAGTCAACCCAGCCACGGAGGAGGAAGAAGAAGAGGAGACGGCATGGGAAGACTTGCGGGAGTGAATTGGGACAGGCCTACAGTGAGTGCCTGCGAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTGTATGATGCTAGTGAGTGCCTGGTAACTCTGTCTGATGGTAGTGAGTGCTTGGGAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTTTCTGATGGTAGTGAGTGCCTGGGAACTCTGTATGATGGTAGTGAGTGCCTGAGAACTCTGTCTGATGGTAGTGAGTGCCTGATAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTTTCTGAAGGTAGTGAGTGCCTGGTAACTCTGTCTGATGGAAGTGAGTACCTGGGAACTCTGTCTGATGGTATTGAGTGCCTGGGAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTGTCTGATGGTAGTGAGTACCTGGGAACTCTGTCTGATGGTATTGAGTGCCTGGGAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTGTATGATGGTAGTGAGTGCCTGGTAACTCTGTCTGATGGACGTGAGTGCCTGGGAACTCTGTCTGATGGTAGTGAGTGCCTGAGAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTGTCTGATGGTTATGTACTGTCAAAAGTCAAGGCGAATGACGTTGGAGTCGTGTCTCTGATGGACTGTGTCTTTGTCAAGACCGATGTTGGTGCGAAGATGACACAAGGCAGCACTGATGACGTCACTGTGTCAGGCAGTGACGCTTGTCCAGAGTGCCATCAAGAGTATGACTTGACTGACATCTACAAAACACTGTCGCCACATTTCAAGCTTCTCATCAACAATCACAAGCAGTGTAGATACCGTCAATTGCTATGGAAATTTGCTCCACTCCAACAGTCACAGCAGCAGCCACTGGTTGCCATGACAACAGCTGATTCACTTGTTGCTGAGACTCCTGCGTCAGTTCCACAAGTCACAAACAGTGCTCGGAGGAAGGTTTTTGTGGGAAACTCGTGGGCTCACAAGATGCAGACGAAGGACATTAGTACATTGCTGGAGTTGTATACTACACCAGGCCAGCCACAGATGTCCGTGACAGAGTGCACATGGCTGGACGGTGTCCACTCTCACCTGAGACGTCAAGAACTGACCGCCAAGTTCCTACACTGGGTACTGAACGACTATGTCATGGTGCTACTGAAGTGTTTCTTCTACATCACAGACAGCACACCAGGCAAGAACAGGGTCCTGTATTACCACAAGAGACTGTGGAGAGTTATCAGGCAGAAAGCTATGGCAGCATTACTGAGAAAAGGCATGCTGAGTCCTATTGATAGGGGAGCAGTCCACTCCCTACTGGGAAGGGGAGCTGCACTAGGAGTGTCATATCTGCGGTTCCTCCCCAAGGCTGCTTCCCTGCGTTCCATCGTCAACATGAGTCGCCGACTATCTCCCAGGACACCTAAGGGGGAAGACTCTACACTTGTTGGATCGTCTGTCTTTGGCATCTCTGACATCTACACCAAGTGGAAGATGTTCGTCCAGCGTCGACATGCCGCAAACGACTCAAGACGTCTATACTGTGTCAAGGTGGACATCAAGTCGTGCTACGACACGGTTGATGCACATCGTCTGTTCTGTCTCATCAGTGAGGTCCTCAACAAGCGAGACTATCGCTATGTGATTCGCCACTATGTCACTGTCACCGAGGCTGGGGGAAAGTTGAAGCGAACGTTTCACAGCAGAGTGGTGACAGAGGAAAACTTTGAAACAAACTTTCTCAATGCGTTGTTGCGCAGTGGCGACATCTTGAGGAAGAACATTCATGATGCGATCATTGGTGATAAGGTGAAGTTCTACTACTGTGAGAAGGAGAAGCTTCTGAAGACATTGAAAGCCCATTTGTTTGGAAACATCATTAAGTTTGATGGCGCGTACTACCTACAGACCCGTGGCATCAGTCAGGGCTCCATTCTGTCAACGCTACTTAACAACTTCTACTATGGCGACCTGGAGAAGCGCCATCTAGTGACACCTCAGAATGGTGAATTACTGATGCGTCACACAGACGATTTCCTGTTCATGACACCGCACCTCGACCGAGCGACCACATTACTTGACACGCTCATTCCTGGTATCCCAGAATACAACTGTCACATAAACACGGAGAAGACATTGTGTAACTTCAAATATGGCAGCATCGCCACACTGCCCCCTACTGCCCTGTTTCCCTGGTGTGGGCTGCTGCTTGATCCCTGTTCCCTGGAAGTGAAACCAGACTACACCCGAGCCCTGACACAAGCTATGAAAGAGTCTCTGACAGCGGAGTTAAGTCACTGCCCAGGAACTGCCATGAAGGATAAACTCGTATTTTGCTTGAGGAACAAGTGCCACGCCCTCTTCTTTGACCCACAGATCAACTCGCCAATTGTGATAAGGACAAATATCTACAACATATTCCTCCACGTGGCAGTTATGTTCCAATGCATCGTGGGCAAGTTTCCCCCCAACCAGGGAGTGCAGAAAAACCCTCCATTCTTCTTTGGAGTCATACAGCAGTTGTCTCAATTTCTTCTCCACCAGTGTCAGATGATTGCTGGGCAAACATTGCAACGACATCAGTCTGCCTACAGATCAGTGTTGAAGCGTCTTAATAGGTGGCGCTCCAGGCTGAAGAAACATTTGGGCAACACGACCAAAGAAGAAGTCATCAAGACTACAAAGCATGCTGGGATAGCAGAAGAACTAACAAGAATGCTGGATTAA

Transcript

Lsat_s089.g0020.t1

CATCGAATCAACGAACAACTCCCGCGTAAATAAATAAGTTAAATCTTTATTTATTTAAAACCATTTCTGATGTGTAACAGCAGCGGAAAGGTCAGGAATCAGAAAGCTCTCAAATTTGTGAAAGAACAAGACCTTTGCAGTATGTCATCACATTTCAGTCAAAAGCGAGTGCGTCGAATCTTGAGTCACTTCTACGTGACAGTAGAGACCCTGGAAGAAGCTGTCACCGCTACAGATGTGACAGGACAGCATGGTGACACGCTGCTCCAGTCTGGTGACAAAGACAGCTACGTTAAATTGATCAGAAATACCTTTGTGGCGACTCCAGCACAAGCCAAGGCCCCGTCACATGACCTGGCCGATTCACCCCACACCGGTACACGTGATCTGGTCGTCACACTGATCGAGAGACTTCACAAGAGGGATGTCTTTCCGCTGCGGAATGTTCTCACTCTGGGATTTCAAGAGCTGTCGGGCGACCCAATGGCCCAGGTGTGCAGTGGAGCGTCCGTAGAACTGATCTACCCGAGTCACAGTCTCAGCATGTTCTACACCAGTCAGTGGCGCACCCTGCTGGAGAGGGTTGGCAACAAGAGACTGATGTATCTACTGGAAAACAGGGCGTTCTTTGTTGTGGTTGCCCCTAGCAACTACCTCCAGGTTGCAGGTATTCCTATCTATGAGTTGTGGCCGTTGCAAGACAAAATGGCTACAGTGGCTCATCCTGGTGGCAAAGTTGTGCATCGAAGAAGAGTTGACAGAGTGAGGAGAGTCACTGAACGACAGAAGAGAAAGAGGAGAAGAATTGTGAGAGAAATAACCGGTGATGTGACAAATGACAAAAAAATTACATGTCACAGAGGGATAAGTGAAACTGTGACAAATGACATTAGTGTGACTTGCCAGAATGTGGCCGGTGATGTTGCAATATATGATAACATTGTGACAAATGACAACAATGCGACAAATAACAACATTGTGACAACTGACAACAGTGTAACACGTGACAGTGATATGAATGACCACAGTTTGACATGTCACAAAGTAGTGAAAGGTGCCACAACGACCAATGAAAAGAAAGTGACCAGAGACATTGCACTAGATCACAACAGTGTGACAAATGCCAGTAATTTGAGTGACAACAATTTAACTTGTCACAGATCAGTGACAGTTAAGAGTGTGGCATATGACAACAGTGTTACCTGTCCCACTATGACAAACAGTTTGACAGTTGACAATGTTACTACTCGCAAAGTGACATGTGCTAGCATGTCATGTGACAATATGACACTCAACTGTATCACTGACACAGAGTTGACACAGACACGTGACATGGGACATGTATCACTGCTTCCAAGGAAACGATCTTGTGGCATGTCATGTGACAATATGACACACAACTGTATCACTGACACAGAGTTGACACAGACACGTGACATGGGACATGTATCACTGCTTCCAAGGAAACGATCTTGTGGCATGTCATGTGACAATATGACACACGACTGTATCACTGACACAGAGTTGACACAGACACGTGACGTGGAACGTGTATCACCACTTCCGAGGAAACGATCTTGTGGCATGTCATGTGACAATATGACACACAACTGTATCACTGACACAGAGTTGACACAGACACGTGACATGGGACATGTATCACTGCTTCCAAGGAAACGATCTTGTGGCATGTCATGTGACAATATAACACACGACTGTATCACTGACACAGAGTTGACACAGACACGTGACATGGAACATGTATCACCACTTCCGAGGAAACGATCTTATGGCATGTCATGTGACAATATGACACACGACTGTCTCACTGACACAGAGTTGACACAGACGCGTGACATGGGACATGTATCACTGCTTCCAAGGAAACGATCTTGTGGCATGTCATGTGACAATATGACACACAACTGTATCACTGACACAGAGTTGACACAGACGCGTGACGTGGGACATGTGTCATCACTTCCAAGGAAACGATCTTGTGACACTTTGGAAAACATGGGAAGCAGCAGGGGAGGAGGGAGAGGGAAGGGAGAAGGAAGGACTGGGGAGTCAACCCAGCCACGGAGGAGGAAGAAGAAGAGGAGACGGCATGGGAAGACTTGCGGGAGTGAATTGGGACAGGCCTACAGTGAGTGCCTGCGAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTGTATGATGCTAGTGAGTGCCTGGTAACTCTGTCTGATGGTAGTGAGTGCTTGGGAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTTTCTGATGGTAGTGAGTGCCTGGGAACTCTGTATGATGGTAGTGAGTGCCTGAGAACTCTGTCTGATGGTAGTGAGTGCCTGATAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTTTCTGAAGGTAGTGAGTGCCTGGTAACTCTGTCTGATGGAAGTGAGTACCTGGGAACTCTGTCTGATGGTATTGAGTGCCTGGGAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTGTCTGATGGTAGTGAGTACCTGGGAACTCTGTCTGATGGTATTGAGTGCCTGGGAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTGTATGATGGTAGTGAGTGCCTGGTAACTCTGTCTGATGGACGTGAGTGCCTGGGAACTCTGTCTGATGGTAGTGAGTGCCTGAGAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTGTCTGATGGTAGTGAGTGCCTGGGAACTCTGTCTGATGGTTATGTACTGTCAAAAGTCAAGGCGAATGACGTTGGAGTCGTGTCTCTGATGGACTGTGTCTTTGTCAAGACCGATGTTGGTGCGAAGATGACACAAGGCAGCACTGATGACGTCACTGTGTCAGGCAGTGACGCTTGTCCAGAGTGCCATCAAGAGTATGACTTGACTGACATCTACAAAACACTGTCGCCACATTTCAAGCTTCTCATCAACAATCACAAGCAGTGTAGATACCGTCAATTGCTATGGAAATTTGCTCCACTCCAACAGTCACAGCAGCAGCCACTGGTTGCCATGACAACAGCTGATTCACTTGTTGCTGAGACTCCTGCGTCAGTTCCACAAGTCACAAACAGTGCTCGGAGGAAGGTTTTTGTGGGAAACTCGTGGGCTCACAAGATGCAGACGAAGGACATTAGTACATTGCTGGAGTTGTATACTACACCAGGCCAGCCACAGATGTCCGTGACAGAGTGCACATGGCTGGACGGTGTCCACTCTCACCTGAGACGTCAAGAACTGACCGCCAAGTTCCTACACTGGGTACTGAACGACTATGTCATGGTGCTACTGAAGTGTTTCTTCTACATCACAGACAGCACACCAGGCAAGAACAGGGTCCTGTATTACCACAAGAGACTGTGGAGAGTTATCAGGCAGAAAGCTATGGCAGCATTACTGAGAAAAGGCATGCTGAGTCCTATTGATAGGGGAGCAGTCCACTCCCTACTGGGAAGGGGAGCTGCACTAGGAGTGTCATATCTGCGGTTCCTCCCCAAGGCTGCTTCCCTGCGTTCCATCGTCAACATGAGTCGCCGACTATCTCCCAGGACACCTAAGGGGGAAGACTCTACACTTGTTGGATCGTCTGTCTTTGGCATCTCTGACATCTACACCAAGTGGAAGATGTTCGTCCAGCGTCGACATGCCGCAAACGACTCAAGACGTCTATACTGTGTCAAGGTGGACATCAAGTCGTGCTACGACACGGTTGATGCACATCGTCTGTTCTGTCTCATCAGTGAGGTCCTCAACAAGCGAGACTATCGCTATGTGATTCGCCACTATGTCACTGTCACCGAGGCTGGGGGAAAGTTGAAGCGAACGTTTCACAGCAGAGTGGTGACAGAGGAAAACTTTGAAACAAACTTTCTCAATGCGTTGTTGCGCAGTGGCGACATCTTGAGGAAGAACATTCATGATGCGATCATTGGTGATAAGGTGAAGTTCTACTACTGTGAGAAGGAGAAGCTTCTGAAGACATTGAAAGCCCATTTGTTTGGAAACATCATTAAGTTTGATGGCGCGTACTACCTACAGACCCGTGGCATCAGTCAGGGCTCCATTCTGTCAACGCTACTTAACAACTTCTACTATGGCGACCTGGAGAAGCGCCATCTAGTGACACCTCAGAATGGTGAATTACTGATGCGTCACACAGACGATTTCCTGTTCATGACACCGCACCTCGACCGAGCGACCACATTACTTGACACGCTCATTCCTGGTATCCCAGAATACAACTGTCACATAAACACGGAGAAGACATTGTGTAACTTCAAATATGGCAGCATCGCCACACTGCCCCCTACTGCCCTGTTTCCCTGGTGTGGGCTGCTGCTTGATCCCTGTTCCCTGGAAGTGAAACCAGACTACACCCGAGCCCTGACACAAGCTATGAAAGAGTCTCTGACAGCGGAGTTAAGTCACTGCCCAGGAACTGCCATGAAGGATAAACTCGTATTTTGCTTGAGGAACAAGTGCCACGCCCTCTTCTTTGACCCACAGATCAACTCGCCAATTGTGATAAGGACAAATATCTACAACATATTCCTCCACGTGGCAGTTATGTTCCAATGCATCGTGGGCAAGTTTCCCCCCAACCAGGGAGTGCAGAAAAACCCTCCATTCTTCTTTGGAGTCATACAGCAGTTGTCTCAATTTCTTCTCCACCAGTGTCAGATGATTGCTGGGCAAACATTGCAACGACATCAGTCTGCCTACAGATCAGTGTTGAAGCGTCTTAATAGGTGGCGCTCCAGGCTGAAGAAACATTTGGGCAACACGACCAAAGAAGAAGTCATCAAGACTACAAAGCATGCTGGGATAGCAGAAGAACTAACAAGAATGCTGGATTAAAATTAATGCCTGAACTTGTGGAAATTAAATAACAGTCATTTCCAATTGAAACATATATCTGACGAAAATGTGAACACGAAAATGTGAAAGTGATTTTGTAGTCACAATGTATGTGATTTTTGTAAAGAACTACATACGCTAGTAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12009	Telomerase_RBD	Telomerase ribonucleoprotein complex - RNA binding domain	Domain	Interproscan
PF21399	TERT_C	Telomerase reverse transcriptase, C-terminal extension	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR003545	Family	Telomerase reverse transcriptase	Interproscan
IPR021891	Domain	Telomerase ribonucleoprotein complex - RNA-binding domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR049139	Domain	Telomerase reverse transcriptase, C-terminal extension	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12066	TELOMERASE REVERSE TRANSCRIPTASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000333	Cellular Component	telomerase catalytic core complex	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003721	Molecular Function	obsolete telomerase RNA reverse transcriptase activity	Interproscan
GO:0003964	Molecular Function	RNA-directed DNA polymerase activity	Interproscan
GO:0007004	Biological Process	telomere maintenance via telomerase	Interproscan
GO:0042162	Molecular Function	telomeric DNA binding	Interproscan
GO:0070034	Molecular Function	telomerase RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-