Gene detail

Detailed information of Lsat_s079.g0090.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s079.g0090.t1	MALATE SYNTHASE	Lsat_scaffold079	2594587	2640365	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s079.g0090.t1

TACCGACGCATCCTGTTTAGAATTAGTAAAATTAGCCGAAACACCAGCCGGGTGACATGATCTACGGGACGCCAGACAAGTCAGCTGACGACTTCCAGGGTGGCTGTAGTGTATCCGAGGTTGAGTCCCCTCCAGAGGGGTGCACCAGTTCTCATGACGTCCTCCTTACATCGGAGGCAGTGGCCTTCGTGAGCAGTTTAGTTAAGGCCTTCAGCAGCCAAGTAGACGAGATTCTTCAGCAGAGGAAATATCTCAAGTTAAAGATTGACCAAACAAAACAATTGCCTGATTTCTCATCAAAAAGCCTTGATGTTCGCCATGGGGACTGGAAAGTTTGTTCCATCCCTAGACGTCTCCAGTGTCGCCATGTTGACCTTGGGGATGTGTCACCTAGCAACACAGAACACTTTGTCGCTGCATTGAAAAGTACTGCCCAAGGAATTCAAACTGACTTTGATGATGGCCATTGTCCTTCGTGGCGCAACCAGTTGACCGGGCTGTACAACGTCTACCTGGCTGTCCACAACGTCATCCCAGGTGTGCCAGACATATCCACTGCGCCAGTACTGATGATGAGACCCCGGGCCTGGAACATGATAGAACACAACATGCTGGTGTCTGGCAGGAAGGTCCCCGGTCCTCTCTTTGACTTTGGTCTGCTCATGTTCCATAATGCCCACATCCTTGTGGACTGTGGGAGCGGACCATTCTTCTACCTGCCCAAGCTTGAAGGCTTCCTTGAGGCTAGGCTTTGGAACAACATTTTCACCTGGACAGAACAAAAGTTGCATCTCCCCACTGGTTGTATCAAGGCCTGTGTACTCATTGAGAATGTGCTCGCATCCTTCGAGCTCCACGAGATTCTCTACGAACTACGCGACCACTCCGCCGGGCTCAACTGTGGAATATGGGACTACTCTGCGTCTTTCGTCAACAAACTTGGCACGCGCCCAGACTTTATGCTTCCCGACCGCAACAAATACGTCTCCATGGACAAACACTTCCTCAAGAGTTACATGGACCTGGTCATTCAGACCTGTCACAGCCACGGCGCACTCGCTACTGGCGGCATGTCTGCACTGCTGCTGCCATCTGGGGACAAGCACAAGTACCAAGAAGTCAAGGCGAAAGCATGCGGAGCGAAGCTGAAAGAAATCCGTGCCGGAGCAGATGGCTTTATGGTGTACGACCTTGGACTCGTGGCACCGATGCAGCAGTTATTCCGAGACCATGCGCCGGGGTCCAACCAGTTGGCTGTGATGAGAGAAGATGTGAAAGTGACAGCGAAGGACCTCCTACTTATGCCTCCTGGAGGCGTTACTCTGGGCGGACTGCAGCACAACATTGCCGTGGGGATACTGTTCGTTGAAGCCTGGCTTCGAGGACGTGGCCATTTCTACTTTAAAGGGTGCGTAGAAGATTCTGCTACAGCCGAGATATCAAGGTCCCAGGTGTGGCAATGGTTGCGACACAGTGCCCCCCTCGAAGACACGAGCACCACAACAGCCGTCACCCAACGCCTTGTCCGCCAACTGATACGAGACCTTCTGCAGCAGATGTTCATCTCAGTCGATCACAACTTCACCCGCGACATTGACCGGCGCCATCTGGTTACTGCAGCCGGCATCTTCGAGGAGATTGTCACAAAGAGGGAGTTCCCAGAATTCATCACTACATACCTTTACGAGGAACATGTGTTTCTAGAGGAACAAGCCAACATGGAAGCTGGCATTGAGGTTGAGAGGAAAAGCAGGCTCTGACGCAATAAGTAGTGCCAAAGAAAACAACAAGAGTAGACTTACAAATTCAGCATCAGCTTTAATGCACACCCTATGGACTTTGAAACACCCCCTATTTGTTGTAGCACACAACAGTGGCTGCCTTTACACTGTCAAGTTTGATCTCCTCAGCCCCACACAGCTGCCTGCTCCTCACACTAGCAGATTGATGTTACTCAAGTTTCCATGTTCATATGTTACACTGAAAGCCACCAAGTGTTGGCCAACAAACATGTTGATGATAGATCACAGTGAAGGAGGAAAGCTACATAACTGAACACAGTAACACAGTAATTAGAACTCTTCTGCATAGCAGAGGTAGGATTACACACACCTGTTACTCACCCAGACGAACCTGCACAAGCACCTCACATTGTGGCTTAGTTGAACAAACACAAGACAACAAGATCAAGTGCAGTGATTGGTCAATAATGTGTAGCTACAGACAGCACCACCTATTGACAATAACTGATGATGTAATATCGCATATGAAGAATGTTTCTCTCACATGCAACAAAGTTCATTTATTATAAATATGGTGTAATTACATTCTAATCTCATAATCTTAAAGCCAGAGAGAGCATGAGCTCCATAGAATCCCACAAGCTACTTACAAAATAGATGCTTATTGTAACTCTGTTCACTACGGAGTCAGTTTCTTCAGAAGCAGCAACATGCCATGTTAATATTTAACACACATCTTTAACAGAAACATTCCACTTGAAACAAGACATGCCATTTGGTATTGAGATAACAATACACCGTGTTCTGATAATGGTAGATTCACACAGGTAAGGCATGGAGAGGGGCCTTTGCCATAATAACAAATATCACACAATGAACTGAGTAGTCCCATTCATTTGAGCCAAGACAACCTAAAGGTGCAGGTTATGAAGTAGATGAATGACGCACGGCGAGAGACGAGAAATACCTATCGCAGACATCGGCATTTCATGCTGAAAATACCTTAATATACACAGATAACACCTCTCGCATCTTATCAATCTGATCATAACAAAAGTCAATTTATTCATGTATTAATATAATTCCACACTAGCAAAAACTATGCACACTTTTTACACAGCCGATTAAGACACCACTGGCTGCAAGACAAGATGAGACATCGGCAATACGAGCAGTGTCACAAAGTATACACACCGCAATAGAAGACACCCTTTGGCCGAGTGGCATTCAACACACAGGTGCCAGACGGCAAAACATTCCCAAACAAAAGCTAGTCGATGTGAAAGCAGATTTTGGCAAACTGCAATCTGGCTTCCTGTTCGTTTTTTATTGTGTGTAACTGGCATAACTATGCACTGATTCAACGTACCTCCAGATCCC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01274	MS_TIM-barrel	Malate synthase, TIM barrel domain	Domain	Interproscan
PF20656	MS_N	Malate synthase, N-terminal domain	Domain	Interproscan
PF20659	MS_C	Malate synthase, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001465	Domain	Malate synthase, TIM barrel domain	Interproscan
IPR006252	Family	Malate synthase A	Interproscan
IPR011076	Homologous_superfamily	Malate synthase superfamily	Interproscan
IPR044856	Homologous_superfamily	Malate synthase, C-terminal superfamily	Interproscan
IPR046363	Homologous_superfamily	Malate synthase, N-terminal and TIM-barrel domains	Interproscan
IPR048355	Domain	Malate synthase, C-terminal domain	Interproscan
IPR048356	Domain	Malate synthase, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42902	MALATE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004474	Molecular Function	malate synthase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006097	Biological Process	glyoxylate cycle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-