Gene detail

Detailed information of Lsat_s044.g0110.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s044.g0110.t1	UNCHARACTERIZED	Lsat_scaffold044	2748876	2761800	+

Gene Structure

More details in Jbrowse Sequence

CDS

Lsat_s044.g0110.t1

ATGGCTGATAAGACCGAAGAAAGCACACTGATAGTGCGCCATCTACCGGAGGAGCTGTCACCATCGGAACAGGAAAATCTACTTAAACACTTTGGAGCGACACGAGTGCGATGCATGGGCAACAGGGGACGCCTGAAGCACACAGCATTCGCAGAGTTTGACGATCATGATGAGGCGAATCTTGCCCTAAAAAGATTGCACCAATTAGACATCCTTGGTTGCAAGCTGGTCGTGGAGTTTTCCTGCGGAAAATACACAAAACATCATCCTCCACCGCTGGAGGTGCCTCCGCTTCCAGAGCTGGAGACTGTAGGCAGCAAGAAAGCCAACACAAACAACAACAAAAAGTTGGCAAATCTCACTCCCGACATCAAGAAAATCACAGATAAGATTAACAGTTTTAGTTCAAAGTTAGACTTTGCTTACCCCATGAATCCAACATTTGAATACATGTACCAGCCTCCATCTGTTAGCATCCTCACAAATATTGCAAATGCCCTGGCAACAGTGCCAAAGTTCTATGTTCAGGTGTTGCACCTTATGAACAAAATGAACTTGCCTGCACCATTTGGGGCAGTAATGGCGACACCCCCGCTGCCCATGGGGGAGCCGATGGAAGAGGTGAAACCATTTGAACCAGACATATTGGAAGAGGAAGAGATGGACGTATCGAGCACAGAAGAATCGGAGATAGAGAGCGACGAAGAGGGAATTGCAAAAGCCTCTGCACCTAAGCGTCTGGCCCGACTGTCGCACAAGAAAGTGAAACGACCCAAGCTACAGAAAGTCGCTGCTATCTCTTCAAAGTTGCAACCATCTCTAGCTCCTGATCCTAAGGATGTGTTTGAACAATTGCCAACTGGTGTAGTAAAAAAGATTGGATTCAAACTGCCTACAGCGATTGCCGAGCTGTTCAATGAGAAGACCGCTTCGGAGGAAAACAGTGCAATGGCTGTGCCACAATTAGTTGCGGAAGCCCCTACTGACATATTGAGCTTGACTGAGAATGAACTGGCGGAGGAAACGCAGGGTGGTTTTGGTAAGATTGAGCCAGTCCCTAAAGCTGAAGAGCAGGAGGAAGAGGAGCCAGAGGAGGAGTGGGGAGCGGGAGAATTCATTTCATCGAGGCGGCTGCGGAGAGGACGGATGAAGAGCTCCGAGATGAAACATGTCAGTGTGTTCAGAAACTACAGCGCAGGAGAACCGAGCTCGCGTCTGTACATCAAGAACCTCCCCAAACAGGTCTCGGAGAAAGACATGCACTACATCTTCGGCAGATATGTAAAATGGGAAGATGAGATAGAAAAGAACACGTTTGACATTCGGTTGATGAAGGAGGGTCGGATGAAAGGTCAAAGTTTCATCACCCTGCCCTCAGTCCAGGCTGCTGAAGAGGCACTCTCGGACACAAATGCCTTTGTCCTGCATGGCCGGCCAATGGTGGTGCAGTTTGCCCGGTCAGCAAAGGCAAAAGAAACGGACAGCAATTCTGATAAAGTTCGACGGAACCGGTGTCAAGTGCGGGTCCTGACTAGTGCCATCATGCCGTTCGCTGATTTAATTGCGTCGCTGCAAAGCAATCCGTACTTCGGGGCGGGGTTTGGGTTGATCGGTGTTGGCACTGGCTTAGCTGTCCTACGAAAAAGTTCTCAATACGGAATGGTGTTTTTCCGTCGCCATTTTCTCATCACCCTGGAGGTGACGAGCAGGGACAAAAGTTACCACTGGCTCCTCCAGTGGATTACCGCACGCGGCACCCGCACACAACATCTCAGTGTCGAGACTACATTTCATCAGAACGACACCGGCAAAATTAGTACAAAGTTTGATTTCATACCGAGCCCCGGAACCCATTTTATGTACTACAAAAACACATGGATACGTGTCGAAAGAAATCGTGAAAAGCAGATGATGGATCTCCAAACGGGTGTCCCTTTTGAGTCTGTGACACTGACTGCGCTGGGAAGACAGCGTTCAATCTATTTTGATCTTCTTAATGAGGCCAGACAGATGGCTCTGCGGGCACAGGAAGGGATGACAGTCATGTACACTGCCATTGGCCCAGAATGGAGACAGTTTGGATATCCACGGAGGAAACGTCCCCTGTCATCGGTTATCCTCGATGACGAGCTCGGAGAGAAAATCCTAGCCGATGTGAAAGAGTTCATCCACAACCCGAAGTGGTATGTAGATAGGGGTATACCCTACCGACGTGGGTATCTGTTGTATGGACCTCCGGGCTGTGGAAAGAGCAGCTTCATAACTGCTCTCGCAGGTGAACTTGACTACAGTATCTGTGTGTTGAATCTGAGCGAGCGAGGACTTTCTGACGACCGACTGAACTACCTCTTAAGTGTCGCTCCACAGCAGAGTATCATACTGCTCGAGGACGTGGATGCTGCTTTCGTCAGCAGAGATCTGGCAGCAGAAAACGCTACTGCCTACCAAGGTATGAGTCGTTTGACGTTCAGTGGACTGCTGAACGCACTGGACGGAGTTGCATCTACAGAAGCTAGAATCGTGTTTATGACTACAAACCATATTGACAGACTCGACCCGGCCCTGATACGACCGGGTCGCGTCGACCGCAAGGAATGCATCGACCTGTGCACCAACTTCCAATTGCAGCAGATGTTCACCCGGTTCTACCCGGACGAGCCAGAGGACAGAGCCGCCGAGTTCGCCGCCAAGATGCTGGCGGAAGTTGGCCCGGTGAGCGCCGCGCATGTGCAGGGCTTGTTCATGCTACGCAAGGACGATGCTAACGCTGTCGTAGAAAACGTCGCCAGTATTACCAAGTTATAG

Transcript

Lsat_s044.g0110.t1

AGGTTGTTGATGGAAGTTTGTCGGCCGTTTCAGAAATGCACAAAGATAATTAACATTTTTGAGTCTCGGAGACTTTCCACTGCCCAGTGACAACAAGATGGCTGATAAGACCGAAGAAAGCACACTGATAGTGCGCCATCTACCGGAGGAGCTGTCACCATCGGAACAGGAAAATCTACTTAAACACTTTGGAGCGACACGAGTGCGATGCATGGGCAACAGGGGACGCCTGAAGCACACAGCATTCGCAGAGTTTGACGATCATGATGAGGCGAATCTTGCCCTAAAAAGATTGCACCAATTAGACATCCTTGGTTGCAAGCTGGTCGTGGAGTTTTCCTGCGGAAAATACACAAAACATCATCCTCCACCGCTGGAGGTGCCTCCGCTTCCAGAGCTGGAGACTGTAGGCAGCAAGAAAGCCAACACAAACAACAACAAAAAGTTGGCAAATCTCACTCCCGACATCAAGAAAATCACAGATAAGATTAACAGTTTTAGTTCAAAGTTAGACTTTGCTTACCCCATGAATCCAACATTTGAATACATGTACCAGCCTCCATCTGTTAGCATCCTCACAAATATTGCAAATGCCCTGGCAACAGTGCCAAAGTTCTATGTTCAGGTGTTGCACCTTATGAACAAAATGAACTTGCCTGCACCATTTGGGGCAGTAATGGCGACACCCCCGCTGCCCATGGGGGAGCCGATGGAAGAGGTGAAACCATTTGAACCAGACATATTGGAAGAGGAAGAGATGGACGTATCGAGCACAGAAGAATCGGAGATAGAGAGCGACGAAGAGGGAATTGCAAAAGCCTCTGCACCTAAGCGTCTGGCCCGACTGTCGCACAAGAAAGTGAAACGACCCAAGCTACAGAAAGTCGCTGCTATCTCTTCAAAGTTGCAACCATCTCTAGCTCCTGATCCTAAGGATGTGTTTGAACAATTGCCAACTGGTGTAGTAAAAAAGATTGGATTCAAACTGCCTACAGCGATTGCCGAGCTGTTCAATGAGAAGACCGCTTCGGAGGAAAACAGTGCAATGGCTGTGCCACAATTAGTTGCGGAAGCCCCTACTGACATATTGAGCTTGACTGAGAATGAACTGGCGGAGGAAACGCAGGGTGGTTTTGGTAAGATTGAGCCAGTCCCTAAAGCTGAAGAGCAGGAGGAAGAGGAGCCAGAGGAGGAGTGGGGAGCGGGAGAATTCATTTCATCGAGGCGGCTGCGGAGAGGACGGATGAAGAGCTCCGAGATGAAACATGTCAGTGTGTTCAGAAACTACAGCGCAGGAGAACCGAGCTCGCGTCTGTACATCAAGAACCTCCCCAAACAGGTCTCGGAGAAAGACATGCACTACATCTTCGGCAGATATGTAAAATGGGAAGATGAGATAGAAAAGAACACGTTTGACATTCGGTTGATGAAGGAGGGTCGGATGAAAGGTCAAAGTTTCATCACCCTGCCCTCAGTCCAGGCTGCTGAAGAGGCACTCTCGGACACAAATGCCTTTGTCCTGCATGGCCGGCCAATGGTGGTGCAGTTTGCCCGGTCAGCAAAGGCAAAAGAAACGGACAGCAATTCTGATAAAGTTCGACGGAACCGGTGTCAAGTGCGGGTCCTGACTAGTGCCATCATGCCGTTCGCTGATTTAATTGCGTCGCTGCAAAGCAATCCGTACTTCGGGGCGGGGTTTGGGTTGATCGGTGTTGGCACTGGCTTAGCTGTCCTACGAAAAAGTTCTCAATACGGAATGGTGTTTTTCCGTCGCCATTTTCTCATCACCCTGGAGGTGACGAGCAGGGACAAAAGTTACCACTGGCTCCTCCAGTGGATTACCGCACGCGGCACCCGCACACAACATCTCAGTGTCGAGACTACATTTCATCAGAACGACACCGGCAAAATTAGTACAAAGTTTGATTTCATACCGAGCCCCGGAACCCATTTTATGTACTACAAAAACACATGGATACGTGTCGAAAGAAATCGTGAAAAGCAGATGATGGATCTCCAAACGGGTGTCCCTTTTGAGTCTGTGACACTGACTGCGCTGGGAAGACAGCGTTCAATCTATTTTGATCTTCTTAATGAGGCCAGACAGATGGCTCTGCGGGCACAGGAAGGGATGACAGTCATGTACACTGCCATTGGCCCAGAATGGAGACAGTTTGGATATCCACGGAGGAAACGTCCCCTGTCATCGGTTATCCTCGATGACGAGCTCGGAGAGAAAATCCTAGCCGATGTGAAAGAGTTCATCCACAACCCGAAGTGGTATGTAGATAGGGGTATACCCTACCGACGTGGGTATCTGTTGTATGGACCTCCGGGCTGTGGAAAGAGCAGCTTCATAACTGCTCTCGCAGGTGAACTTGACTACAGTATCTGTGTGTTGAATCTGAGCGAGCGAGGACTTTCTGACGACCGACTGAACTACCTCTTAAGTGTCGCTCCACAGCAGAGTATCATACTGCTCGAGGACGTGGATGCTGCTTTCGTCAGCAGAGATCTGGCAGCAGAAAACGCTACTGCCTACCAAGGTATGAGTCGTTTGACGTTCAGTGGACTGCTGAACGCACTGGACGGAGTTGCATCTACAGAAGCTAGAATCGTGTTTATGACTACAAACCATATTGACAGACTCGACCCGGCCCTGATACGACCGGGTCGCGTCGACCGCAAGGAATGCATCGACCTGTGCACCAACTTCCAATTGCAGCAGATGTTCACCCGGTTCTACCCGGACGAGCCAGAGGACAGAGCCGCCGAGTTCGCCGCCAAGATGCTGGCGGAAGTTGGCCCGGTGAGCGCCGCGCATGTGCAGGGCTTGTTCATGCTACGCAAGGACGATGCTAACGCTGTCGTAGAAAACGTCGCCAGTATTACCAAGTTATAGAGCTACCACCAGTCGTGTATGTGTAAAGGGTCTTTACTCGCACAACATTACGAAAGGCAGGTTCACTCGAGACACCGTATGGTGGTTGATCTTCTCGATTGGAACCATCATTTTAGGTTAATTATGTGTACAATCTGACGTGTTCTTGTACTGCACACTCGTGCATTCGGTTTTAAGTTAATTATGTGTACAATCTGACGCGCTCTTGTCCTGCACAAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF08740	BCS1_N	BCS1 N terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR003960	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR014851	Domain	BCS1, N-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR034147	Domain	RBM40, RNA recognition motif 1	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR045164	Family	RNA-binding region-containing protein RBM41/RNPC3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16105	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005689	Cellular Component	U12-type spliceosomal complex	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0030626	Molecular Function	U12 snRNA binding	Interproscan
GO:0097157	Molecular Function	pre-mRNA intronic binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-