Detailed information of Lsat_s036.g0191.t1 in Lamellibrachia satsuma Gene info
Gene IDAnnotationScaffoldStartEndStrand
Lsat_s036.g0191.t1VACUOLAR PROTEIN SORTING VPS16Lsat_scaffold03652736165310470+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04840Vps16_CVps16, C-terminal regionRepeatInterproscan
PF04841Vps16_NVps16, N-terminal regionRepeatInterproscan
PF05920Homeobox_KNHomeobox KN domainFamilyInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001356DomainHomeobox domainInterproscan
IPR006925DomainVps16, C-terminalInterproscan
IPR006926DomainVps16, N-terminalInterproscan
IPR008422DomainHomeobox KN domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR016534FamilyVacuolar protein sorting-associated protein 16Interproscan
IPR038132Homologous_superfamilyVps16, C-terminal domain superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR12811VACUOLAR PROTEIN SORTING VPS16Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003779Molecular Functionactin bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005765Cellular Componentlysosomal membraneInterproscan
GO:0005768Cellular ComponentendosomeInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0007033Biological Processvacuole organizationInterproscan
GO:0016197Biological Processendosomal transportInterproscan
GO:0030897Cellular ComponentHOPS complexInterproscan
GO:0042144Biological Processvacuole fusion, non-autophagicInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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