| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Lsat_s034.g0240.t1 | COLLAGEN ALPHA | Lsat_scaffold034 | 6450017 | 6454135 | - |
| CDS | |||||
| Lsat_s034.g0240.t1 | |||||
| Transcript |
| Lsat_s034.g0240.t1 |
| Protein |
| Lsat_s034.g0240.t1 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01391 | Collagen | Collagen triple helix repeat (20 copies) | Repeat | Interproscan |
| PF01607 | CBM_14 | Chitin binding Peritrophin-A domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002557 | Domain | Chitin binding domain | Interproscan |
| IPR008160 | Repeat | Collagen triple helix repeat | Interproscan |
| IPR036508 | Homologous_superfamily | Chitin binding domain superfamily | Interproscan |
| IPR050149 | Family | Collagen superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24023 | COLLAGEN ALPHA | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005576 | Cellular Component | extracellular region | Interproscan |
| GO:0005615 | Cellular Component | extracellular space | Interproscan |
| GO:0008061 | Molecular Function | chitin binding | Interproscan |
| GO:0031012 | Cellular Component | extracellular matrix | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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