Gene detail

Detailed information of Lsat_s033.g0239.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s033.g0239.t1	ATP-DEPENDENT RNA HELICASE DBP3	Lsat_scaffold033	4631066	4666914	-

Gene Structure

More details in Jbrowse Sequence

CDS

Lsat_s033.g0239.t1

ATGGGCGAGTGTACTGTAGACGTCAAGTGTGGTTCGACAGTGCTGCAACTCCCCTCGTTGTTGTCAGCAGCGCGCCTACAGCGCTGGGCTCTGCTGCTTACGGGCCACGATTATGACATCCACTACCGCGCTTCGGCAGAACACTGCAACGCAGATGCTCTGTCTCGACTTCCTGCCGGTCCGGATGTCGCATTTGACCGCGAGGAGGAAGTCAGAGCAATCACATCTGAAGTCCAGCAGATCGCCACAGAGGTTGTCAGCGAGTTCCCGATCACGTGGAAGCTCGTCGCGGAGTGCACCGAGAAGGATACTGTCCTGTCGCAAGTGCTAAACTTCGTGCGCAACGGTTGGCCGACGTCTGGGTCAAAGTGCAGGATGGACGCTCTGAGACCATTCTTCAACACGCAGACGGAGATTTGTCAAGTGAACGGCGTCATACTACGAGACTGTCGTGTGGTAGTACCACAGGAGCTTCAGACCAAGGTGATCACCATGCTACACCAGTCTCATCGCGGAGTTGTTTGCATGAAGACGATGGCACGACTGTATGTCTGGTGGCCGAACATCGAGGCGAGCGTCGAAGCCTGCTGTAAAGCGTGCAACGTCTGCGCTGTTACAGCACCGGCACCAACTGCCAACTTGTCGCCATGGCCACTGCCCGATGAGCCGTGGGACCGCATTCACGTGGACTTTGCTGGCCCATTCTTGGGTAACATGTGGATGCTGGTCATGGACGCTTACTCAAAGTGGCCCAGCGTCGTTCGTATGTCAAAGTATCCGACTACGGAGACCACTATTATGGCGCTCAACATTCTTTTCACCACGTTGGGTTCTCCAAAGACACTTGTCTCGGATAACGGGCCTCAGTTCGGGTCGAAGCAGTTTGAGGACTGGTGTCGCCTGAACGGCATCGTACACTTCACAAGTGCCCCTTTTCACCCGCCCTCTAATGGCGAGGCCGAACGCCTGGTGGGCGTTTTCAAGACAGCGATGCAGCGTTCCGTGGGAGAGGAAGGGAAGGAGAGAGACAAGGCTACCATGGGCTTTCTTCGCGAGTACCGCAGCACGCCGAACTGCGCCACGGGGCGTACTCCGGCTGAGCTGATGATCGGACGGCAAGTTCGAACTCCGCTCTCTCTTCGTCTTCTACGACCATCCGTACATCACGACAAGTGGCCGCCGCTACACTCCACCACCTTAGCAATGCCAAGAGAAAACAGATCTTACAGGAAGCGATCTCGGTCCCGATCGAAGTCAAAATCTCGGATAGAATCACGATCTCGTAGATCACGTAGCCGGGACCGTACAAGACGAAAGTCTCGAGACAGGAGCAGGGACCGTGACAGGCGGAGGTCACGGGAAAGGAGGTCAAGGTCACGGGACAGACGATCGAGGTCACGGGAACGTCGGAGAAGCAGAGACAGAGACAGGAGGCACAGTAAGGAGAGACAAAGGGATGATGATGCCAAGTCATCAGGTCACGACAGGAACAAACCAAGTCATGTGAAACATGTGGAAGGGGCCATCAGTGTGAAGGATGAACCTCTCGATAAGGAGGCGGAACAGAAGCGTCTTGAGTATGAGATGCAGAAGCGGCGGGAGAGGATTGAACAGTGGCGCACGGAGAGAAAGAAAACATTTGAGGCGACTCAGATTGTCATCACTCCGGTGTCAAAGAAGTGGAGTCTGGAGGATGATGATGATGAGGAGGAACCATCAGCAGATGGCGCTAACAAAGATGCAAACGGCGAAGAGGACGATGTTGATACGTTGGATGCTTACATGCAGGAGCTTCAGCATGCCAAAAATGGCAGCAAAGAGACCAAGAAAACAGTGATTCCTGACATAGAAGACAACAAGTCAAAGGTGACAATGATCACAGCTGTAGCAAAGAAGAAAGAAGATCCAAGCAAGACTAAGGGTGAACTGATGCTGTCAAACATGGATGCCATGGAGTATTCATCTGAGGAAGAGGAAGAGAATTTGGATGATACGATGGCGAGACTAGCCAAGAAAAAGAAGGACCTGATACAAGTAGATCATGAAAAGATTTACTACCGACCGTTCAGGAAAGATTTCTACATTGAAGTTCCAGAGATTGCCCGAATGACGCCTGAAGAGGTGGCTGCCTACAGGATAGAGCTGGAGGGCATCAAGGTGCGGGGCAAGGGGTGTCCCAAACCCATCAAGACCTGGGCTCAGTGCGGAGTCGAGAAGAAGGTGATGGAATGTCTGAAGAAGGGTTTGTTTGAGACCCCGACTCCGATCCAGTCACAGGCTATTCCTGCCATCATGTCTGGGAAGGACGTCATTGGCATTGCCAAGACTGGCAGCGGCAAGACAATAGCATTTCTACTGCCCATGCTTCGTCATATTCTCGACCAGCCCCCTCTGGAGGATGACGATGGACCAATTGCCATCATAATGACGCCGACGAGAGAGCTCGCCATACAGATAACGAAGGATTGTAAACGCTTCACAAAGCCACTGAACCTGAAGGTTGTCTGTGTGTACGGAGGCACGGGAATCTCTGAGCAGATCGCGGAACTGAAGCGAGGGGCGGAGATCATTGTCTGCACACCCGGCAGGATGATTGACATGTTAGCAGCCAACAACGGTCGGGTGACAAATCTGCGGCGGTGTACGTACATTGTGCTAGACGAGGCAGACAGGATGTTTGACATGGGCTTTGAACCTCAGGTCATGAAGATTGTCGACAATGTGCGGCCCGACCGACAAACGGTCATGTTCTCAGCTACTTTCCCCCGCCAGATGGAGGCACTAGCCAGACGTATCCTCAATAAGCCAATTGAGGTGCAGGTCGGAGGTCGCAGTGTGGTGTGCACAGATGTTGAACAACATGTGGTGGTGATTGAGGAGGACGACAAGTTCTTCAAGCTGCTGGAGTTGTTGGGTATCTACCAGGAGGGGGGCAGTGTGCTGGTGTTTGTGGACAAGCAGGAGCATGCAGATGATCTAATGAAGGACCTCATGCGCCACTCCTACCCGTGTCTCGCTCTGCACGGGGGCATAGACCAGTACGACAGAGACAGTACCATCTCAGACTTCAAATCCAGCAATATTAAACTGTTGGTGGCCACGTCTGTAGCAGCTCGTGGACTTGATGTAAAAGAACTCATCCTTGTCGTCAACTACGACTGTCCTAACCACTACGAGGACTACGTGCACAGATGTGGGCGGACGGGACGTGCTGGCAACAAGGGCTTTGCATACACATTCATCACATCAGAGCAATACCGCTATGCTGGTGACATCATCAGGGCAATGGAGATGTCCAACACAACAATTTCGCCCGAACTCAAGAAGCTGTGGGACGATTACGTCAACAAATCACAGGCGGAGGGTAAACGGGTGAAGAGCCAGAGTGGTTTCAAAGGCAAGGGTTTCAAGTTTGACGAGACAGAGGCTCATCTTGTTAGCGAGCGCAAGAAACTCCAGAGGGCAGCAATGGGCTTCCAAGACTCGGACGACGAGGAGAGTGGCATGGACATAGACCAGCAGATAGAGGACATGTTTGCGAGTGTGAAGCGGGTCACAGATGTCACCAAGCCCATGGTGAACCAACAGGGCCCTCCCTCTGCCAGTAACATGCAGAAACTGGAGTTGGCCAAACGCCTCGCATCTCGCATCAACATGGCCAAGAACCTTGGGGCTGAGGCACAGGACATCACACAACAAGCTGCAGCTGCCATCTTCAAGGGCAGCATGCCGGCACCGTCAGTCTCGTCGAAGTCGATCGCAGAGCAGATGGCGGAGAAGATCAACGCCAAGTTGGGCTACAAGCCACCGGTGGAGGAAGAGAAGGAAGATGAGGGGAATGCTGGGGAGACCTTCAAGAGGTACGAGGAGGAACTCGAGATCAACGACTTCCCTCAGACTGCACGCTGGAAGGTCACCTCCAAGGAGGCGCTGGCACAGATTTGCGAGTTCTCCGAGGCAGGCATCACGGTGCGAGGGACATACCTGCTGCCCAAGAAGGAGCCGAAGGAGGGAGAGAGGAAGCTGTACCTCGCCATCGAGGCCACCAGTGAGCTTGCCATTCAGAAGGCAAAGGCCGAAGTCACGCGACTCATCAAGGAAGAACTTGTCCGACTGCAAAATTCCTACCAACCAATCAGCAGAGGCAGATACAAAGTCGTGTGA

Transcript

Lsat_s033.g0239.t1

GAGAAACTGGTTGGAAGAAGATTGGTTCCCCTCGGCTCGCTTGATCGTATATCAGACTCTGCGCCTACGGCCAGCGCCAGATCAGCGTTATGGGCGAGTGTACTGTAGACGTCAAGTGTGGTTCGACAGTGCTGCAACTCCCCTCGTTGTTGTCAGCAGCGCGCCTACAGCGCTGGGCTCTGCTGCTTACGGGCCACGATTATGACATCCACTACCGCGCTTCGGCAGAACACTGCAACGCAGATGCTCTGTCTCGACTTCCTGCCGGTCCGGATGTCGCATTTGACCGCGAGGAGGAAGTCAGAGCAATCACATCTGAAGTCCAGCAGATCGCCACAGAGGTTGTCAGCGAGTTCCCGATCACGTGGAAGCTCGTCGCGGAGTGCACCGAGAAGGATACTGTCCTGTCGCAAGTGCTAAACTTCGTGCGCAACGGTTGGCCGACGTCTGGGTCAAAGTGCAGGATGGACGCTCTGAGACCATTCTTCAACACGCAGACGGAGATTTGTCAAGTGAACGGCGTCATACTACGAGACTGTCGTGTGGTAGTACCACAGGAGCTTCAGACCAAGGTGATCACCATGCTACACCAGTCTCATCGCGGAGTTGTTTGCATGAAGACGATGGCACGACTGTATGTCTGGTGGCCGAACATCGAGGCGAGCGTCGAAGCCTGCTGTAAAGCGTGCAACGTCTGCGCTGTTACAGCACCGGCACCAACTGCCAACTTGTCGCCATGGCCACTGCCCGATGAGCCGTGGGACCGCATTCACGTGGACTTTGCTGGCCCATTCTTGGGTAACATGTGGATGCTGGTCATGGACGCTTACTCAAAGTGGCCCAGCGTCGTTCGTATGTCAAAGTATCCGACTACGGAGACCACTATTATGGCGCTCAACATTCTTTTCACCACGTTGGGTTCTCCAAAGACACTTGTCTCGGATAACGGGCCTCAGTTCGGGTCGAAGCAGTTTGAGGACTGGTGTCGCCTGAACGGCATCGTACACTTCACAAGTGCCCCTTTTCACCCGCCCTCTAATGGCGAGGCCGAACGCCTGGTGGGCGTTTTCAAGACAGCGATGCAGCGTTCCGTGGGAGAGGAAGGGAAGGAGAGAGACAAGGCTACCATGGGCTTTCTTCGCGAGTACCGCAGCACGCCGAACTGCGCCACGGGGCGTACTCCGGCTGAGCTGATGATCGGACGGCAAGTTCGAACTCCGCTCTCTCTTCGTCTTCTACGACCATCCGTACATCACGACAAGTGGCCGCCGCTACACTCCACCACCTTAGCAATGCCAAGAGAAAACAGATCTTACAGGAAGCGATCTCGGTCCCGATCGAAGTCAAAATCTCGGATAGAATCACGATCTCGTAGATCACGTAGCCGGGACCGTACAAGACGAAAGTCTCGAGACAGGAGCAGGGACCGTGACAGGCGGAGGTCACGGGAAAGGAGGTCAAGGTCACGGGACAGACGATCGAGGTCACGGGAACGTCGGAGAAGCAGAGACAGAGACAGGAGGCACAGTAAGGAGAGACAAAGGGATGATGATGCCAAGTCATCAGGTCACGACAGGAACAAACCAAGTCATGTGAAACATGTGGAAGGGGCCATCAGTGTGAAGGATGAACCTCTCGATAAGGAGGCGGAACAGAAGCGTCTTGAGTATGAGATGCAGAAGCGGCGGGAGAGGATTGAACAGTGGCGCACGGAGAGAAAGAAAACATTTGAGGCGACTCAGATTGTCATCACTCCGGTGTCAAAGAAGTGGAGTCTGGAGGATGATGATGATGAGGAGGAACCATCAGCAGATGGCGCTAACAAAGATGCAAACGGCGAAGAGGACGATGTTGATACGTTGGATGCTTACATGCAGGAGCTTCAGCATGCCAAAAATGGCAGCAAAGAGACCAAGAAAACAGTGATTCCTGACATAGAAGACAACAAGTCAAAGGTGACAATGATCACAGCTGTAGCAAAGAAGAAAGAAGATCCAAGCAAGACTAAGGGTGAACTGATGCTGTCAAACATGGATGCCATGGAGTATTCATCTGAGGAAGAGGAAGAGAATTTGGATGATACGATGGCGAGACTAGCCAAGAAAAAGAAGGACCTGATACAAGTAGATCATGAAAAGATTTACTACCGACCGTTCAGGAAAGATTTCTACATTGAAGTTCCAGAGATTGCCCGAATGACGCCTGAAGAGGTGGCTGCCTACAGGATAGAGCTGGAGGGCATCAAGGTGCGGGGCAAGGGGTGTCCCAAACCCATCAAGACCTGGGCTCAGTGCGGAGTCGAGAAGAAGGTGATGGAATGTCTGAAGAAGGGTTTGTTTGAGACCCCGACTCCGATCCAGTCACAGGCTATTCCTGCCATCATGTCTGGGAAGGACGTCATTGGCATTGCCAAGACTGGCAGCGGCAAGACAATAGCATTTCTACTGCCCATGCTTCGTCATATTCTCGACCAGCCCCCTCTGGAGGATGACGATGGACCAATTGCCATCATAATGACGCCGACGAGAGAGCTCGCCATACAGATAACGAAGGATTGTAAACGCTTCACAAAGCCACTGAACCTGAAGGTTGTCTGTGTGTACGGAGGCACGGGAATCTCTGAGCAGATCGCGGAACTGAAGCGAGGGGCGGAGATCATTGTCTGCACACCCGGCAGGATGATTGACATGTTAGCAGCCAACAACGGTCGGGTGACAAATCTGCGGCGGTGTACGTACATTGTGCTAGACGAGGCAGACAGGATGTTTGACATGGGCTTTGAACCTCAGGTCATGAAGATTGTCGACAATGTGCGGCCCGACCGACAAACGGTCATGTTCTCAGCTACTTTCCCCCGCCAGATGGAGGCACTAGCCAGACGTATCCTCAATAAGCCAATTGAGGTGCAGGTCGGAGGTCGCAGTGTGGTGTGCACAGATGTTGAACAACATGTGGTGGTGATTGAGGAGGACGACAAGTTCTTCAAGCTGCTGGAGTTGTTGGGTATCTACCAGGAGGGGGGCAGTGTGCTGGTGTTTGTGGACAAGCAGGAGCATGCAGATGATCTAATGAAGGACCTCATGCGCCACTCCTACCCGTGTCTCGCTCTGCACGGGGGCATAGACCAGTACGACAGAGACAGTACCATCTCAGACTTCAAATCCAGCAATATTAAACTGTTGGTGGCCACGTCTGTAGCAGCTCGTGGACTTGATGTAAAAGAACTCATCCTTGTCGTCAACTACGACTGTCCTAACCACTACGAGGACTACGTGCACAGATGTGGGCGGACGGGACGTGCTGGCAACAAGGGCTTTGCATACACATTCATCACATCAGAGCAATACCGCTATGCTGGTGACATCATCAGGGCAATGGAGATGTCCAACACAACAATTTCGCCCGAACTCAAGAAGCTGTGGGACGATTACGTCAACAAATCACAGGCGGAGGGTAAACGGGTGAAGAGCCAGAGTGGTTTCAAAGGCAAGGGTTTCAAGTTTGACGAGACAGAGGCTCATCTTGTTAGCGAGCGCAAGAAACTCCAGAGGGCAGCAATGGGCTTCCAAGACTCGGACGACGAGGAGAGTGGCATGGACATAGACCAGCAGATAGAGGACATGTTTGCGAGTGTGAAGCGGGTCACAGATGTCACCAAGCCCATGGTGAACCAACAGGGCCCTCCCTCTGCCAGTAACATGCAGAAACTGGAGTTGGCCAAACGCCTCGCATCTCGCATCAACATGGCCAAGAACCTTGGGGCTGAGGCACAGGACATCACACAACAAGCTGCAGCTGCCATCTTCAAGGGCAGCATGCCGGCACCGTCAGTCTCGTCGAAGTCGATCGCAGAGCAGATGGCGGAGAAGATCAACGCCAAGTTGGGCTACAAGCCACCGGTGGAGGAAGAGAAGGAAGATGAGGGGAATGCTGGGGAGACCTTCAAGAGGTACGAGGAGGAACTCGAGATCAACGACTTCCCTCAGACTGCACGCTGGAAGGTCACCTCCAAGGAGGCGCTGGCACAGATTTGCGAGTTCTCCGAGGCAGGCATCACGGTGCGAGGGACATACCTGCTGCCCAAGAAGGAGCCGAAGGAGGGAGAGAGGAAGCTGTACCTCGCCATCGAGGCCACCAGTGAGCTTGCCATTCAGAAGGCAAAGGCCGAAGTCACGCGACTCATCAAGGAAGAACTTGTCCGACTGCAAAATTCCTACCAACCAATCAGCAGAGGCAGATACAAAGTCGTGTGAGACCAGATCAAAGGTTCAGCCAGAGGCCAGGAAACGTACAGAGGATGTATATCAATACTGTGACAGTGTCAAAAATATGTGCTGGCATCCCGGCCATGTCAGCAAGGATGTGTGCTGGCATCCTGGCCACGTCAGCAAGGATGTGTGCTGCATTTGTGTGGCTATGTCAGCATAGAAGTTTGCTGACAACATGTTGACGTTGAAGCTATGTTGGCAGAACCGTGAACTTGAGTAACACCAAAGCTGTATATGGCAGCTGCTACACTGCTGCATGTACTTAGAATGCAGCAAGGCAGTGTTATTAGGTTAGTGAAGAACATCTGTAAGCAGCAAGACAGACATCAGTCAAACGGTATACTAGATGTACCTTACCAGGCAACAACAGTCACACAACGTGACAGGGTGGAACACCACTGAATGTGGGGTATTACCCCCACCACTCTCATTTCATTCCTTCATAACTGATATTAGCACACAGTCCAGTTACTGACCAACGGTCAAGTCCACAATTCATCCCTTGTATTTAGTCATAACAAGAACTACATCAAGGAAATTAGGACAGTCCACAGGTAACTTAACAAATGTCATGTAGGAGAACGAGTTTTAAGTGGATGACTCGATGTTGTTAGTTGACGGGAGTCCTGAATCAGGTCTCGGGTCAGATGGGGGAACAAGTGTGACAAATTACCTCATCTTATTTTTAAATTTCATTTTAATAAATGAATTGTTAGTCTTATTAATTGAAGAGCATTTTATATTATTGAGAAAAAAATCACCTGTCGAATCAAGTGAGAAATTGTGCAACTGGGTTGTGATTGTGATAGAAGCCGCTGAGCAGTGTTATTTCCTATCATTTGTTAAACAGAACCGTGTTCTTTCTGTCGATTATCTACTGACTGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-