Gene detail

Detailed information of Lsat_s025.g0229.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s025.g0229.t1	CYTOKINE RECEPTOR	Lsat_scaffold025	5166196	5210880	+

Gene Structure

More details in Jbrowse Sequence

CDS

Lsat_s025.g0229.t1

ATGGCATCCTTTCGGGTGACTGTGGCCACTGACAGGATCACTGTTCACTGGGATAGCACCGATGTCTCTACAGACACGATCTTCACCATTTGGCTTGACTCTGCAGCGAAATATACTGGAAAAATCACATCTCGCTCTTACACCATCAGGGAACTGGATGCTGGGATAACGTATTCCCTGCAGGTGGATACCACCACCAATGGAAACACCAAGTACCCAGTTGGTACACAATACACAACAAAGCCAAATGCTGCAAGCGGTTTGAAAACAACTGCCATTGAGACGAGTTGCGTCAACTATGAACACCTGACGTTGAATATTGAGTGGGGCAAATCGATGGGACTGGGAAGCAATGAAAGGGATGTAAGGGATAGACTGGGAGGCAATGAAAGGGATGTAAGGGATGGACTGGGAGGCAATGAAAGGGATGTAAGGGATGGACTGGGAGGCAATGAAAGGGATGTAAGGGATAGACTGGGAGGCAATGAAAGGGATGTAAGGGATGGACTGGGAGGCAATGAAAGGGATGTAAGGGATGGACTGGGAGGCAATGAAAGGGATGTAAGGGATGGACTGGGAGGCAATGAAAGGGATGTAAGGGATGGACTGGGAGGCAATGAAAGGGATGTAAGGGTTGGACTGGGAGGCAATGAAAGGGATGTAAGGGATGGACTGGGAGGCAATGAAAGGGATGTAAGGGATAGACTGGGAAGCAATGAAAGGGATGTAAGGGATAGACTGGGAGGCAATGAAAGGGATGTAAGGGTTGGACTGGGAGGCAATGAAAGGGATGTAAGGGATGGACTGGGAAGCAATGAAAGGGATGTAAGGGATAGACTGGGAGGCAATGAAAGGGATGTAAGGGATGGACTGGGAGGCAATGAAAGGGATGTAAGGGATGGACTGGGAGGCAATGAAAGGGATGTAAGGGTTGGACTGGGAGGCAATGAAAGGGATGTAAGGGATGGACTGGGAGGCAATGAAAGGGATGTAAGGGATGGATTGGGAGGCAATGAAAGGGGTGTAAGGGATGGACTGGGAGGCAATGAAAGGGATGTAAGGGATGGACTGGGAGGCAATGAAAGGGGTGTAAGGGATGGACTGGGAGGCAATGAAAGGGATGTAAGGGTTGGACTGGGAGGCAATGAAAGGGATTGGGTGAAACCAGTAGGGTTGTACGCCAACATTAGTATCACGTATGGACCGAGAGGGCAGTCTGAAGCTACAACAATCACTGCTGGAACACAGACAGAGAAGAAAATTAATGACGTTGAATCAGGCACAGAATACACAGTGACCGTTTATAGTCTCAGTGGTCCATACACCAGTGCTGGCTCTTCTATTAACATAACTACAAAGCCGTCAACAGTTTCCGAAATCAAGGTGAAGGAACGCTCAACAACGTTTTTGAAAATCTCGTGGAAACAACCGGCTGGTGATTTAACGTATTATGAGGTGAAACTAAAACCCATCGACGGCGGCAAGGAACAGTCCATAACTGTAAACAGGGGATTTACTTTGGAACATACCTTTAGAAATCTAAAGCCCGGTTACCAATACAATATCTCAATAACTGTATGGGCAAGTTCGAGCAGAGGTTCGGAGGCCTACAGTATTCAGCAAACAAAGCCGCTGTCTCCGACTGACCTGCGAGTAACATTCACTACCACGACAAGTGTGATGATCCAGTGGCAGTATGACAGTAACGCGTCATACTTTATCAAGTGGCATGTGGTGTTCAGGGAGATATACAATGCTCAAGAGAATGACGTCACTATAAAAGATAAGTCCATGCGGGAGATAAATATCAGCAAGTTGACACCCGGACAGACGTACTCCGTCGATGTGTATGCTGTCACGACGTGTGACATTCGCAGTCAGCCGCTAGCACAAGTAAACGTCACTGTAGAACCTCTTCCAGTGACCGGACTGTGGGCAGTTGCTAAAGACAATCCATTGCCTCCAACGCAACTGAAAGTTGACAAAGATATGACAACTACAAGCAGTGTGACATTGAAGTGGGAGTATGACGAAAGGAAGTCACACAGCGAAACGTGGCAAGTCGTGCACACGATCAAGGGGGAATCTAAGATGACAGTCATATACACAGATCAGCTGCAACAGACCATTGCTGGACTGACACCGGGACAGAACTACTCAGTGTTTGTCTACAGTGTCACTACTAGTGACATTGTAAGTCAGAGTGCGGCACCAGTAGAAGCCACTGTCAAGCCGGAAATAAAGATTGACTTGCGTGAAGACAGTCGAACTGACACAGAGTCCGTCGTTATAGTTTACACTAACGAGACTGGCGAAGGGCTGTTTGACCAATACATCTTCACTATCGATGATCAATATTCTACAACCATTGTCAGGACAAGACACGACGAGCGGGTGGTGAGATTCGGATCATTGGTCTCTGGCCACATGTACAAAATCACAGCACAGACCGGAAGCGGCAATGAAAGAAGTCGAGAGATCCACATAAATGTCCACACCGCATCGGCTTCCAAGCTGGCGGCAGCTCTAGGGGGGAGTCTGGGGTCTGTCACTGTGGTAGTTGGCGTTGGTGTCCTTGTGTTCTTCCTGCTAAAGAGACGAAGTGTCTTCGTCCACAACCCATACTTTTCCGGTGACACGTTCATCAACCCTCTGCGTTGTTCAGACCAGGAAGACAAGGTAGACAAAAGTCACCGTTGTAAGCTTGACGACTTCCCGGAGCACTGGACGAAGAAGACGGCCGACTCAAATTTGTTGTTTGCCGCCGATTACGAGGAACTGAAGCCCATCGGATGTGAACAGTCAAAAAACGTTGCCGGGTTGCCGGTCAACAAAGCCAAGAATCGGTTCACCAATATCCTTCCGTACGACAAAACTCGCATCAAGCTGATGTCCGGCGGGGCGACAACCGAGGGAACCGACTACATCAACGGCAACTGGATGCCGGGCTACAACTCGAAGCGGGAGTACGCCGTCGTGCAGGGACCTCTCCCAGGAACTAAAAATGATTTCTGGAGGATGATTTGGGAGCAGAAGGCGCGAGCCATCGTTATGCTGACGAAGTGCGTGGAAAAAGGAAGGGACAAGTGTAGCCACTACTGGCCTGTGGACATGAAGCCCGTGTACTACGGAGACCTGAAAGTGGAGGTTCTCAGCGAGAGCAAGTCTACAGATTGGGTCGTGACCAAATTTGAAGTTTCCATGGGACTTAAAAGCCACACACTTACACACTACCACTACGTTACGTGGCCAGACTTCGGAGTGCCGGACAATACTCAGTCCCTCATCGGCTTTGTTCGACTCGTACGCAGAAGCCTCGACCCAGTTGGAGCCCCCGTCGTTGTCAACTGCAGCGCTGGTGTCGGTCGCTCCGGGACGTTCGTAGTGCTGGACCGGCTTCTGCAGCACATAGAAGAACATGACTGGGTGGATGTCTACAACACTGTCTACGAGTTGCGTCTGTATCGTAACCTAATGGTGCAGACTGAGACACAATACATCTACATTCACAACTGTCTGCTGTGTGTCGTCGAAGGGCGGGAAGACCCGGAATATGAAGACACCGGGGAGGACAATGAAGGTTACGTCGAAGGCAACTCTGCCAACACGAGGAAAGCTTTCACGGTCACATTTCCCATTACTTCAACTGAGGGTGATGATGACGAAGAAGTACACAATGAACACTTACGGGAAAGGTTATCAGAGGAAGACAGTGTTGACGTGACCCGCCATCTGACGTTATCAGAGGAAGACAGTGTTGACGTGACCCACCATCTGACGTTATCAGAGGAAGACAGTGTTGACGTGACCCACCATCTGACGTTATCAGAGGAAGACAGTGTTGACGTGACCCGCCATCTGACGTTATCAGAGGAAGACAGTGTTGACGTGACCCACCATCTGACGTTATTAGAGGAAGACAGTGTTGACGTGACCCACCATCTGACGTTATCAGAGGAATACAGTGTTGACGTGACCCACCATCTGACGTTGTCAGAGAAAGACAGTGTTGACGTGACCCGCCATCTGACGTTATCAGAGGAAGACAGTGTTGACGTGACCCACCATCTGACGTTATCAGAGGAAGACAGTGTTGACGTGACCCACCATCTGACGTTATCAGAGGAAGACAGTGTTGACGTGACCCACCATCTGACGTTATCAGAGGAAGACAGTGTTGACGTGACCCGCCATCTGACGTTATCAGAGGAAGACAGTGTTGACGTGACCCACCATCTGACGTTATCAGAGGAAGACAGTGTTGACGTGACCCACCATATGACGAATGCTTGCAAGACAACTAGCTTACAGTGCTTCACCTATTCCTTACAACTCGCTGCATGCATGCTCGACCCACGCTTTGGTCTGAGATGGGCGGACCATGATGTGATGGCTGGCGACAGCGAAAAACGTAAGCGTGCCATACGGGGCTACGTGCTGGCCATCTACATGGGTGACCAGACCGTGGCACAGAACACACTTAGTGATGCCAGCCAGCCACCACCCTGCATAGTTCGACGACTGTTTGCGTACCAATCAACCAGCAGTCCACAGCGATCTCAGACCCTGTCGCTTGCCGCGGAGTATGCGGTGTACCTGGACATTATAGAAAGCGAAGAATGCGACAAGGATTGCCTGACGTCTTGGGATACCAATCGCACCAAATTTCCGAAGCTGTTTTCGATTGTGCAATCAATATCAGCTGTCCTTGCCAGCAGTTCTCCTGCGGAAAGGGTGTTTAGCCAAGGTGGCATTATTATGCGCCCACACCGATCATCACTGGCCGACACCAAGGTGACAAAGTTGATCTACCTTAAATGTAACATGCAGGTCTAG

Transcript

Lsat_s025.g0229.t1

GTCAGCTGTCACCCAGTGTCTGAGTCACCACTCCGCGTTTCCAGCTGGAGTTTGGAAACTGTTTGAACATGACCGGTTGCCCCTTCTCTAATACCTTCAAATTACAAGGAGATTGTCGTGATATTTTGTGAAGAGCGGTGTCATGGCATCCTTTCGGGTGACTGTGGCCACTGACAGGATCACTGTTCACTGGGATAGCACCGATGTCTCTACAGACACGATCTTCACCATTTGGCTTGACTCTGCAGCGAAATATACTGGAAAAATCACATCTCGCTCTTACACCATCAGGGAACTGGATGCTGGGATAACGTATTCCCTGCAGGTGGATACCACCACCAATGGAAACACCAAGTACCCAGTTGGTACACAATACACAACAAAGCCAAATGCTGCAAGCGGTTTGAAAACAACTGCCATTGAGACGAGTTGCGTCAACTATGAACACCTGACGTTGAATATTGAGTGGGGCAAATCGATGGGACTGGGAAGCAATGAAAGGGATGTAAGGGATAGACTGGGAGGCAATGAAAGGGATGTAAGGGATGGACTGGGAGGCAATGAAAGGGATGTAAGGGATGGACTGGGAGGCAATGAAAGGGATGTAAGGGATAGACTGGGAGGCAATGAAAGGGATGTAAGGGATGGACTGGGAGGCAATGAAAGGGATGTAAGGGATGGACTGGGAGGCAATGAAAGGGATGTAAGGGATGGACTGGGAGGCAATGAAAGGGATGTAAGGGATGGACTGGGAGGCAATGAAAGGGATGTAAGGGTTGGACTGGGAGGCAATGAAAGGGATGTAAGGGATGGACTGGGAGGCAATGAAAGGGATGTAAGGGATAGACTGGGAAGCAATGAAAGGGATGTAAGGGATAGACTGGGAGGCAATGAAAGGGATGTAAGGGTTGGACTGGGAGGCAATGAAAGGGATGTAAGGGATGGACTGGGAAGCAATGAAAGGGATGTAAGGGATAGACTGGGAGGCAATGAAAGGGATGTAAGGGATGGACTGGGAGGCAATGAAAGGGATGTAAGGGATGGACTGGGAGGCAATGAAAGGGATGTAAGGGTTGGACTGGGAGGCAATGAAAGGGATGTAAGGGATGGACTGGGAGGCAATGAAAGGGATGTAAGGGATGGATTGGGAGGCAATGAAAGGGGTGTAAGGGATGGACTGGGAGGCAATGAAAGGGATGTAAGGGATGGACTGGGAGGCAATGAAAGGGGTGTAAGGGATGGACTGGGAGGCAATGAAAGGGATGTAAGGGTTGGACTGGGAGGCAATGAAAGGGATTGGGTGAAACCAGTAGGGTTGTACGCCAACATTAGTATCACGTATGGACCGAGAGGGCAGTCTGAAGCTACAACAATCACTGCTGGAACACAGACAGAGAAGAAAATTAATGACGTTGAATCAGGCACAGAATACACAGTGACCGTTTATAGTCTCAGTGGTCCATACACCAGTGCTGGCTCTTCTATTAACATAACTACAAAGCCGTCAACAGTTTCCGAAATCAAGGTGAAGGAACGCTCAACAACGTTTTTGAAAATCTCGTGGAAACAACCGGCTGGTGATTTAACGTATTATGAGGTGAAACTAAAACCCATCGACGGCGGCAAGGAACAGTCCATAACTGTAAACAGGGGATTTACTTTGGAACATACCTTTAGAAATCTAAAGCCCGGTTACCAATACAATATCTCAATAACTGTATGGGCAAGTTCGAGCAGAGGTTCGGAGGCCTACAGTATTCAGCAAACAAAGCCGCTGTCTCCGACTGACCTGCGAGTAACATTCACTACCACGACAAGTGTGATGATCCAGTGGCAGTATGACAGTAACGCGTCATACTTTATCAAGTGGCATGTGGTGTTCAGGGAGATATACAATGCTCAAGAGAATGACGTCACTATAAAAGATAAGTCCATGCGGGAGATAAATATCAGCAAGTTGACACCCGGACAGACGTACTCCGTCGATGTGTATGCTGTCACGACGTGTGACATTCGCAGTCAGCCGCTAGCACAAGTAAACGTCACTGTAGAACCTCTTCCAGTGACCGGACTGTGGGCAGTTGCTAAAGACAATCCATTGCCTCCAACGCAACTGAAAGTTGACAAAGATATGACAACTACAAGCAGTGTGACATTGAAGTGGGAGTATGACGAAAGGAAGTCACACAGCGAAACGTGGCAAGTCGTGCACACGATCAAGGGGGAATCTAAGATGACAGTCATATACACAGATCAGCTGCAACAGACCATTGCTGGACTGACACCGGGACAGAACTACTCAGTGTTTGTCTACAGTGTCACTACTAGTGACATTGTAAGTCAGAGTGCGGCACCAGTAGAAGCCACTGTCAAGCCGGAAATAAAGATTGACTTGCGTGAAGACAGTCGAACTGACACAGAGTCCGTCGTTATAGTTTACACTAACGAGACTGGCGAAGGGCTGTTTGACCAATACATCTTCACTATCGATGATCAATATTCTACAACCATTGTCAGGACAAGACACGACGAGCGGGTGGTGAGATTCGGATCATTGGTCTCTGGCCACATGTACAAAATCACAGCACAGACCGGAAGCGGCAATGAAAGAAGTCGAGAGATCCACATAAATGTCCACACCGCATCGGCTTCCAAGCTGGCGGCAGCTCTAGGGGGGAGTCTGGGGTCTGTCACTGTGGTAGTTGGCGTTGGTGTCCTTGTGTTCTTCCTGCTAAAGAGACGAAGTGTCTTCGTCCACAACCCATACTTTTCCGGTGACACGTTCATCAACCCTCTGCGTTGTTCAGACCAGGAAGACAAGGTAGACAAAAGTCACCGTTGTAAGCTTGACGACTTCCCGGAGCACTGGACGAAGAAGACGGCCGACTCAAATTTGTTGTTTGCCGCCGATTACGAGGAACTGAAGCCCATCGGATGTGAACAGTCAAAAAACGTTGCCGGGTTGCCGGTCAACAAAGCCAAGAATCGGTTCACCAATATCCTTCCGTACGACAAAACTCGCATCAAGCTGATGTCCGGCGGGGCGACAACCGAGGGAACCGACTACATCAACGGCAACTGGATGCCGGGCTACAACTCGAAGCGGGAGTACGCCGTCGTGCAGGGACCTCTCCCAGGAACTAAAAATGATTTCTGGAGGATGATTTGGGAGCAGAAGGCGCGAGCCATCGTTATGCTGACGAAGTGCGTGGAAAAAGGAAGGGACAAGTGTAGCCACTACTGGCCTGTGGACATGAAGCCCGTGTACTACGGAGACCTGAAAGTGGAGGTTCTCAGCGAGAGCAAGTCTACAGATTGGGTCGTGACCAAATTTGAAGTTTCCATGGGACTTAAAAGCCACACACTTACACACTACCACTACGTTACGTGGCCAGACTTCGGAGTGCCGGACAATACTCAGTCCCTCATCGGCTTTGTTCGACTCGTACGCAGAAGCCTCGACCCAGTTGGAGCCCCCGTCGTTGTCAACTGCAGCGCTGGTGTCGGTCGCTCCGGGACGTTCGTAGTGCTGGACCGGCTTCTGCAGCACATAGAAGAACATGACTGGGTGGATGTCTACAACACTGTCTACGAGTTGCGTCTGTATCGTAACCTAATGGTGCAGACTGAGACACAATACATCTACATTCACAACTGTCTGCTGTGTGTCGTCGAAGGGCGGGAAGACCCGGAATATGAAGACACCGGGGAGGACAATGAAGGTTACGTCGAAGGCAACTCTGCCAACACGAGGAAAGCTTTCACGGTCACATTTCCCATTACTTCAACTGAGGGTGATGATGACGAAGAAGTACACAATGAACACTTACGGGAAAGGTTATCAGAGGAAGACAGTGTTGACGTGACCCGCCATCTGACGTTATCAGAGGAAGACAGTGTTGACGTGACCCACCATCTGACGTTATCAGAGGAAGACAGTGTTGACGTGACCCACCATCTGACGTTATCAGAGGAAGACAGTGTTGACGTGACCCGCCATCTGACGTTATCAGAGGAAGACAGTGTTGACGTGACCCACCATCTGACGTTATTAGAGGAAGACAGTGTTGACGTGACCCACCATCTGACGTTATCAGAGGAATACAGTGTTGACGTGACCCACCATCTGACGTTGTCAGAGAAAGACAGTGTTGACGTGACCCGCCATCTGACGTTATCAGAGGAAGACAGTGTTGACGTGACCCACCATCTGACGTTATCAGAGGAAGACAGTGTTGACGTGACCCACCATCTGACGTTATCAGAGGAAGACAGTGTTGACGTGACCCACCATCTGACGTTATCAGAGGAAGACAGTGTTGACGTGACCCGCCATCTGACGTTATCAGAGGAAGACAGTGTTGACGTGACCCACCATCTGACGTTATCAGAGGAAGACAGTGTTGACGTGACCCACCATATGACGAATGCTTGCAAGACAACTAGCTTACAGTGCTTCACCTATTCCTTACAACTCGCTGCATGCATGCTCGACCCACGCTTTGGTCTGAGATGGGCGGACCATGATGTGATGGCTGGCGACAGCGAAAAACGTAAGCGTGCCATACGGGGCTACGTGCTGGCCATCTACATGGGTGACCAGACCGTGGCACAGAACACACTTAGTGATGCCAGCCAGCCACCACCCTGCATAGTTCGACGACTGTTTGCGTACCAATCAACCAGCAGTCCACAGCGATCTCAGACCCTGTCGCTTGCCGCGGAGTATGCGGTGTACCTGGACATTATAGAAAGCGAAGAATGCGACAAGGATTGCCTGACGTCTTGGGATACCAATCGCACCAAATTTCCGAAGCTGTTTTCGATTGTGCAATCAATATCAGCTGTCCTTGCCAGCAGTTCTCCTGCGGAAAGGGTGTTTAGCCAAGGTGGCATTATTATGCGCCCACACCGATCATCACTGGCCGACACCAAGGTGACAAAGTTGATCTACCTTAAATGTAACATGCAGGTCTAGATCTAGAAATAGGTAGCACCTGTGTTACCAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF05699	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR008906	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR050713	Family	Receptor-type Tyrosine-protein Phosphatases/Ushers	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46957	CYTOKINE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-