Gene detail

Detailed information of Lsat_s024.g0086.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s024.g0086.t1	SODIUM-GLUCOSE COTRANSPORTER REGULATORY PROTEIN -RELATED	Lsat_scaffold024	1815830	1829398	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s024.g0086.t1

CGAAGGCAGCCGCTACAAAGTGACTGTAATTTCGTTGTCTGACAAAATGAAACTCATGCTAACGACTTTATCCGACGAACTGTTTAATATAGAAGTAGCAGATGACATAGATTTATTAAATTTTAAAGCTTTATGCGAGTTTGAATGCGGAATTCCAGCTACTCAAATTGCCATTCTCTGGAATGGACGTCCGTTGCATGACGATAAGTTGAAATTAAAAGATTATGGTATCGGGGACGGAGAAATGCTACTGATACAGCGGATACAAGGAGCAAGGGGGACTTCATCAGTGGGAGGTAGTGCCCCAAGTAGGAATCCGGGTATGCTTAACATCGATTTTGGCAGCATTAATATACCCGGGTCTTCAGGACAGCAGCCAACGGCATCAGTGCCAGCACCCCCAAGCCAGGACGAACTTCCCGAAGATCCAGCAGCTCTGAGAGAAATGCTGCTTGCCAGTCCACATGATCTGTCTATTCTGAAGGAGCGCAATCCTCCTTTAGCTGACGCCTTGCTCAGTGGTAGTTTAGAAAAGTTTGCCGAGGTGCTTCAAAAACAGCAGAATGAACGCATCGAACGTAACAGAGAGCGCATGCGTATGATCACTGCCAATCCGTTTGATCCGGATGTGCAGAAGAAGATCGCAGAAGAAATAAGGCTTAAAAATGTGGAGACAAACATGGAGACGGCAATGGAGTTTGCTCCAGAGAGCTTTGGTCAGGTCGTCATGCTCTACATAGATTGTCAGGTGAATGGACAGCCAGTGAAAGCATTTGTAGATTCAGGTGCACAGATGACGATAATGAGTCAGGCGTGTGCGAGGCGGTGTCATATAAATCGACTGATTGACACACGGTGGGCAGGCGTGGCGAAGGGCGTGGGCACGCAGAAGATCCTTGGTCGCGTACACTTATGTCAGATCCAGATAGGTCCAGACTACCTGCAATCATCCTTCTCTATCCTGGAGGATCAACCCATGGACATGTTACTGGGACTTGATATGCTCAAGCGGCACCAGTGCTGTATAGACCTTAAGCGTAATGTGCTGGTGATCGGCACAACAGGGAGAGAGACTCCCTTCCTGGGCGAGGGTGATGTGCCCGAGCACGCCCGACTGAACCGCACGATGGAGTCAGGTCAATCGTCAGAAGACCAGCAACTCGCTGAAGCTCTACAGCGCTCGGAACAAGAGGCTTCCGGGGCGTTGCCAACGTCTGGAACATCAGCCTCCACATCCTCAACAGCAGCAGCAGCATCCTCGGGTTCACCTTCACAAGGTTCCCAGTTTCCCGAGAAAGACATTCAGCAGTTGATGAGCCAAGGTTTCCCACGGGCTCAGGTCGTCCAGGAACTAGGTCAGGCTGGTGGCAATGTTGATGCTGCCCTCGTGGCATTGCTGACAAAATCATTTCAGATGCCGTGAATGCGACTTCGGTGCTAGCTTTCATTTCTGGTTCGTTACATATCAACATTTCGTCATCCGGTGAGTTTCCATACGTTGTAGTCATGACTTATCCTTTGAGTGCTGTTGCTTGGTTGAAACCAAGAAGAAATTAAGTTTAGTGACAGCTATTTTGTTCTGTATACATGGTTTCTATAGATGATGTATTTTGTGTCTTTTTCTTGGAATACAGATGTATGTTTGGGGCTAATTTTGTTGGTAGTGCTGCCAGAGCTTGGCATATTTGCTACATACAGATTGCTACGAACATCGCAACAGTAGAACAAAGTAGATTTCACTGATGGTGTAGCCTAGCGTTGCAGCGTTAACATTTCTGTGTTTTCAATTATTGAATGATCTCTGAAGACTTCGATTCAAGTGGGCTGCAATTCGTAAATGTACCATTTGATATAAATGTACGGTGCTAGTCTGCTTTGCCAATATTGAGTTATCAATTTTACTGGTTTACCATGGATAACTATTGCAGTCGTCACATATATTGTGTCATTTTAACTTTGTCTGATATAGTACTTTGTACAATGCACAACTTTCCTAACAGGACATCGTAATATGACCATGACTACATTTAGTCAATGCCTTTAATGTTAGTTGTCAAAGATATGAACAAAGACGTTTTCCAGAAAGCGTTTACTGTGTAGTAATAATGTAGTATGCCAAGAAATAAACCACTGGAATTACTGGTTGCAGTGGGAACTGATTAATCATGGTAAAAAATGACTGGCCATTTCAAAGGCCAGTTTTTCTAATGTTAATAGAATATGATTTATTTTATTTCCTCCATTTGCTATTTAGATGAAATCATGTTTAGTTGTCATTTTCCTTGTGCATGTTGCTAATGGCTGTATTGAAAGACCGATACTTAATTTTGTTGTTCGCCTGAAGACATTTTTTATTTAAATAAATAAAATCGAATTATTATATTTTAAATATATAATTTATATAGCGTCATATTAACCAAGTGCTCTTTGGTGTGTGAATGTGGTAATATTTTAATTTATTTTCGTTGCTTTTTTTAATACTTAGTAAGTAGTTTGTGTGTGCGTGTGTGCTAAATGTTGTTATAACATCTTTAGTGTGTGGTTTGTTTACAGTAGTAGAAATGTTAATTATAACCTATTTTTGTATGTGAAGTAAACGTCATGCATGGTGGATTAGATAGCTTCTCTTGGGCAGCTGTCCATGTCTCATAAATCACTGCCCACTACAGAGGCTACTTAAGGCAATGCATCTGAACAGTGCATAACTGCCATGATGTATCCTAAAATTATCATTTTGAAGTTACATTAAAGGACTTTACAGAGCATTCATATGTTCACAATTTATAGTGAATGCAGATTGTATCCTTTCTTAATGTTGCATAATACAACGTGTAATTTATAACCAACTACAACATGTAATTTATAACAAACCTACGTTTATATCCTTCAAACTGACATCACAGCTTATGACTGAGACAAAGTACAGGATATTGTGCGCATGGTAAGACTACTGTGTAGAAAAATAAAGAATTTAGCATCAAGATACACTTGTGTTTACCAAACTGATTTCTTCAAGTTGCTTTCAAGGCAGCCATCACATTGGTGCCCTAAGCTGACATCTAGTGGTAGGAAATAATAACTCGACTACACCTGCAGAGCAGAACATTTCATTAAACATGAATTTAATGTGGTTAATTTTAAAGTTGGTAGTTATGCTTCACAGAGGCGATCACACTTGAAACATTTCAAATGATTCGTAAGAAAACTACAATATAAAACTTTTATTGGACAACTTACAAGAAACATGTCAACGTGATAATGAGCCACACATTTTAGAGGAATGCCGACACTTTTTCATCTTTCTTACGAGACATGAACAATCTCTCACCGACCTTACCTGATGTTTCTTCAACCGTACACTATCAATCCCGTTGCACTAGCCAAGTTCACTGAATGGATATGTCTGTCTTTGTTCAAAATAAAAGACAATCTATCTGAGGTTTAGGTCATAATGATCTGTCCCAACAAACAATGAACCCAATAACAAAACTTCTCAATTGTAGGGACA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|UBA
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_PIM

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240	ubiquitin	Ubiquitin family	Domain	Interproscan
PF00627	UBA	UBA/TS-N domain	Domain	Interproscan
PF09668	Asp_protease	Aspartyl protease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR015940	Domain	Ubiquitin-associated domain	Interproscan
IPR019103	Domain	Aspartic peptidase, DDI1-type	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR033882	Domain	DNA damage inducible protein 1 ubiquitin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15397	SODIUM-GLUCOSE COTRANSPORTER REGULATORY PROTEIN -RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-