Gene detail

Detailed information of Lsat_s022.g0292.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s022.g0292.t1	TETRATRICOPEPTIDE REPEAT PROTEIN 31	Lsat_scaffold022	8162829	8195977	-

Gene Structure

More details in Jbrowse Sequence

CDS

Lsat_s022.g0292.t1

ATGACGCTGACTTTATCAGAAGCACACGAAATACTAGAAATGCCAATAGGTGCTGACCCAGACTCCATTAGAACAAGCTATAAAAGGCTGTCACTTAAGTGGTACCCAGAGAGCCATGGCAATTCACCAGATGTCACAAAAAAATTTAAAGAAGTTACAAGAGCGTACAAGAGGATCATGCTTGGCGCTGACACTCCAGACATGTCACTGGATGACGTCTACAACATTTTTGACCAGGTGATGAGCAATAAATTTTCGTACAGCAATGGAATCAACTCGAGTGACGATGATGACAGTGACGACGATGACGACGATGACGATGAGCCATGCCAGTTTACAGAGATACGGTTGAAAACAGAAAGCGACTTATCATCTAGGAGAAATTTAACCTTAGAGGAAATAGAGAGAAATGCAAATGAGCTTATATCAGAAGAAGAAAAGGAAAAGAGGCGAGCGGTAAAGAGGAGGGCAAAGAAGAAGAGGAGGCGTGAGAAAAAGAGGCAAGAGAAATTACAAGCAGAACAACAGAAGAAGGATGAGGAAGACCAAAAGAAACATTTGAGTCAGACGAAGAACGGTATCGGGGAGAAAGACAGAACGAGAGGGAAGAAACAGGAGAGGACGGCCGACTCATCAGATCTAGAAGCTGAGGAGTTTGACACGACGGCGGCGTTCTTCACAGCTGCAATCAATAAGAAAAAGAAAAAGACGCCAGGTGGACAGACAGAGCCACACCCGCCAAGTAGACAGAGGGCCGCTGACAGTCACGGAGCTGACGACAACGTTGAAGAGCTTGATCCAGTCGTTTTGCGCAGTCGGCAGTTAGCAATACGAGGCAACGAGATGGCCAATAGCGGTCACTACAACCCAGCTGTTGACCTGTTCACAGAAGCCATCAAGCTTGACCCAATGGACTTCAGGTTTTTCGGCAATCGTTCCTACTGCTACGACAGGATGCAGCGGTTTGAAAGAGCCCTGAAAGATGCTGAGTGTGCCGTCACACTAGCACCAGAGTGGCCCAAGGGATACTTTCGTAAAGGCCGTGCATTAGCTGGTCTCAAGCTGTATGCAGAGGCTGAGCAGGCATTTGTTCAAGTCCTGAAACTTGACCAGAAGTGTGAGGACGCTGTACAGGAACTGCTCCGAGTTCGCACTCACCAAATCACAGAAATGGGGTTTTCGCGCCAGCAGGCGGAGCAAGCAATACGACAACATGGCAGTGTACAACAGGCACTCGACTTACTACTGGCTGGTGTTGTGGGTGACACGTCATTGTCAAGTGACGTGTACATCTCCGATGAGGAAGACTACGCAACACAGGTATCGCTGGCTGTGTCGATTCCACTTGTGGCAGGTTCACCGGTTCACCAGCGAGTGGCGCCACTACCAACGTCATTACACAACCTGCCTCCACATATACCGCCACGCGTCAACGACGTAAAGATGGACTCGGCCAATCCTGAGGGTTTGACGGCCCTCTGGGTGGGAAATGTCCTACCAGAGGTGAACGATAAAAAACTTGTGCAGATGTTTTCCAAATTTGGAGAAGTGACGAGCGTGCGGGCTTTACCAGATAAATTCTGCGCATTTATCAACTTCAAAAAGAAAGAATGCGCAGGGAAGGCCATGGCGGCTCTTCAGGGCATGGAATGTGCCGGACAAAAACTATATATAAGGTTCCCCGACAATCCCGTGACCAGCAATGGAACTGTGGTCACGCGGAAAACGTCGACAACAGGCTCCAAAAGATCAGTATATTCCAAGTTTGGAGTGACAGGACTAATGCACATGACTGTGGAAGCGCAACACGTAGACGAAACTGGCAGATTCGACTTACCTTTCCGCATTCCTCGTTCTAACAGCGGCACAGTGACAAAACCACAGGCACAGGTGACAAAACCACAAGCACAGGTTATAAAACCACAAGCACAGGTGACAAAACCACAAGCACAGGTGATAAAACCACAAGCACAGGTGACAAAATCACAGACACAGGTGACTAAACCACAGGCGACGATGACACAGCAACAACTTGGAGCAAAGCAGCAGGTGACATCAACGATGAAACCATCGGGGACTGCGCGCTCATCGAAGCCACCAGTGAAGGTGACGGGACCAGTGAACGGCAATGAGTGTTACTTCTGGCGGACGACTGGCTGCTCATTCGGCAAGAATTGCCACAATAAACACGTCCCCGGCCACAAGGGTATTGACATCAAGCCATGGCACATGAAATAG

Transcript

Lsat_s022.g0292.t1

GGTTGATGTCACGTGGTCATGACATTGCTGAAAATAAAATGGCCGCAACCATTCTTGTTTTCTGAATCATTCAAAAAGCTGCATCGTTTATAGTCTTCTTAGTTAGATATATATTTACCGACAATGACGCTGACTTTATCAGAAGCACACGAAATACTAGAAATGCCAATAGGTGCTGACCCAGACTCCATTAGAACAAGCTATAAAAGGCTGTCACTTAAGTGGTACCCAGAGAGCCATGGCAATTCACCAGATGTCACAAAAAAATTTAAAGAAGTTACAAGAGCGTACAAGAGGATCATGCTTGGCGCTGACACTCCAGACATGTCACTGGATGACGTCTACAACATTTTTGACCAGGTGATGAGCAATAAATTTTCGTACAGCAATGGAATCAACTCGAGTGACGATGATGACAGTGACGACGATGACGACGATGACGATGAGCCATGCCAGTTTACAGAGATACGGTTGAAAACAGAAAGCGACTTATCATCTAGGAGAAATTTAACCTTAGAGGAAATAGAGAGAAATGCAAATGAGCTTATATCAGAAGAAGAAAAGGAAAAGAGGCGAGCGGTAAAGAGGAGGGCAAAGAAGAAGAGGAGGCGTGAGAAAAAGAGGCAAGAGAAATTACAAGCAGAACAACAGAAGAAGGATGAGGAAGACCAAAAGAAACATTTGAGTCAGACGAAGAACGGTATCGGGGAGAAAGACAGAACGAGAGGGAAGAAACAGGAGAGGACGGCCGACTCATCAGATCTAGAAGCTGAGGAGTTTGACACGACGGCGGCGTTCTTCACAGCTGCAATCAATAAGAAAAAGAAAAAGACGCCAGGTGGACAGACAGAGCCACACCCGCCAAGTAGACAGAGGGCCGCTGACAGTCACGGAGCTGACGACAACGTTGAAGAGCTTGATCCAGTCGTTTTGCGCAGTCGGCAGTTAGCAATACGAGGCAACGAGATGGCCAATAGCGGTCACTACAACCCAGCTGTTGACCTGTTCACAGAAGCCATCAAGCTTGACCCAATGGACTTCAGGTTTTTCGGCAATCGTTCCTACTGCTACGACAGGATGCAGCGGTTTGAAAGAGCCCTGAAAGATGCTGAGTGTGCCGTCACACTAGCACCAGAGTGGCCCAAGGGATACTTTCGTAAAGGCCGTGCATTAGCTGGTCTCAAGCTGTATGCAGAGGCTGAGCAGGCATTTGTTCAAGTCCTGAAACTTGACCAGAAGTGTGAGGACGCTGTACAGGAACTGCTCCGAGTTCGCACTCACCAAATCACAGAAATGGGGTTTTCGCGCCAGCAGGCGGAGCAAGCAATACGACAACATGGCAGTGTACAACAGGCACTCGACTTACTACTGGCTGGTGTTGTGGGTGACACGTCATTGTCAAGTGACGTGTACATCTCCGATGAGGAAGACTACGCAACACAGGTATCGCTGGCTGTGTCGATTCCACTTGTGGCAGGTTCACCGGTTCACCAGCGAGTGGCGCCACTACCAACGTCATTACACAACCTGCCTCCACATATACCGCCACGCGTCAACGACGTAAAGATGGACTCGGCCAATCCTGAGGGTTTGACGGCCCTCTGGGTGGGAAATGTCCTACCAGAGGTGAACGATAAAAAACTTGTGCAGATGTTTTCCAAATTTGGAGAAGTGACGAGCGTGCGGGCTTTACCAGATAAATTCTGCGCATTTATCAACTTCAAAAAGAAAGAATGCGCAGGGAAGGCCATGGCGGCTCTTCAGGGCATGGAATGTGCCGGACAAAAACTATATATAAGGTTCCCCGACAATCCCGTGACCAGCAATGGAACTGTGGTCACGCGGAAAACGTCGACAACAGGCTCCAAAAGATCAGTATATTCCAAGTTTGGAGTGACAGGACTAATGCACATGACTGTGGAAGCGCAACACGTAGACGAAACTGGCAGATTCGACTTACCTTTCCGCATTCCTCGTTCTAACAGCGGCACAGTGACAAAACCACAGGCACAGGTGACAAAACCACAAGCACAGGTTATAAAACCACAAGCACAGGTGACAAAACCACAAGCACAGGTGATAAAACCACAAGCACAGGTGACAAAATCACAGACACAGGTGACTAAACCACAGGCGACGATGACACAGCAACAACTTGGAGCAAAGCAGCAGGTGACATCAACGATGAAACCATCGGGGACTGCGCGCTCATCGAAGCCACCAGTGAAGGTGACGGGACCAGTGAACGGCAATGAGTGTTACTTCTGGCGGACGACTGGCTGCTCATTCGGCAAGAATTGCCACAATAAACACGTCCCCGGCCACAAGGGTATTGACATCAAGCCATGGCACATGAAATAGCACGGTGGCGGAATCAACGGATACTCGATGTGCTGTGGTAATCAACTGCATTGAAAATGACAAATTAGCAGTGCATTTGTGTATCACAGTGATACATGTACATTGTATACAGTGCCATTGTGTTCCTGGCTGGCCAGTAGGCAACGTGAAGCTGTCTGCGATATTGACAGTGCGACCACTTTCGTTGCTGTTTCCACGTGCTCTGGTCAGCCAGTCTCCTGTCGTCTGTGGAATAATTCGCTAAGATATATAAAAACGTAATCAAAATAAGTTGATGATTGATTGTGGGTCTTCTAATGCCATAGTGTGGATATGCGTAACTCAAAATAAAACGTCAGATGTGATATTAATTCCGGTTTTGTTGCTATAACCTTGATGTGTCTTATTTCAACCTTGCTTACGTTGCTTCTGTGAAAGAATGAACCTAATCGCTTCCATCTGCTGTTTTAATTAATGGCATTGACTGCTATAATTTGGAAGCAATGTCAGCGGGGACTGTTTTTCGTAGTGATCACGGAATACGATGTCGAATCAGTTAAGTTTAATATTTTGTTAATTGTGATGCGGAGATGTTGTTTCTCGGTATGTCGTGCCAATACACAGAACCATCGGTTTTGATGAATGCGGGAAATACGTGAAAAACTTTTTAATGGAGACCCTTTTCAATGTAACATGAGTATGTAATATTGACCTCGTGTGAATTTGGTAGAACTATTTCACTGCATTGTGTCGCAACTATTGCATTCACACCTCGACCTGCTTAATTCATGCTAGACACAGTGTGCTTAATTCCTGGCAACACCTAACAAAATCAGCTTTAGTAGCGAAATGTCACTGAACATTAGAGAATTGTTTACCCATGATTGAACACTACAAAGCATTTCTAGTTTTGGTTTCACTGCGTTACATGTCAATCCATGTACTATATAACATTGCACACCACTCATCATTTTATTCACTCGTCGCAGTAATTATGAGGTTTTGGAATGCACCCCTATTTATTGGGATGGTTTCTACTTTTGGAACAACTCACAAGGTATTGGAAGATTTCCAGAACAGTATGATCACCTGCTTCTCCGGGGTAATCAAACATCGGGTGATCAAACTAGTCGGTCATTACAGTAGTGCATGTCACATATTTTTTGTAATAAAACGCCATAAAAAGTGCTATGATGAAGCAGCAAAAAAAAGCAAGATTTTACGTAAGTTGGCCAGTAATTTACGATCGACCGGCCTGTTTGTGTGCCGAGTATTGTGGCAAGGT

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|UBA

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00226	DnaJ	DnaJ domain	Domain	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR001623	Domain	DnaJ domain	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR015940	Domain	Ubiquitin-associated domain	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036869	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47678	TETRATRICOPEPTIDE REPEAT PROTEIN 31	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-