Gene detail

Detailed information of Lsat_s019.g0475.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s019.g0475.t1	GUANYLATE BINDING PROTEIN	Lsat_scaffold019	9252109	9286657	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s019.g0475.t1

GACGTCACGAGGCCAATTGCAAGATGGGAGTGCGCGTGACGTCAGATTTCAAAAGTCAACATGGCTACTTCCGAAAGAAAGTCGGGTCATCCGACGAAATTCAGTTCACCAGGGTCGAGATATAATACAGTTTCAGCGGATGGCAGAAAGTTGAAAGGTCGGCCAATACCAGTGGTTGTTGCGAAGGATGACCACACATTTGAGCTGGACGAAAAGGCACTGGAGAGCATCCTGCTTGATCCGCGCGTGCGCGACAAGAAGGTTGTCGTTCTATCGGTGGCCGGGGCCTTCCGCAAGGGAAAGTCCTTCCTGCTTGACTTCTTCCTCAGATACCTCGACAGACAGGGTGCATCTGACTGGCTGGGCAATGAATGCGCCCCACTGGAGGGGTTCCCATGGCGGGGCGGGGCAGAACGTAACACGACAGGCATGCTCATGTGGAGCGAACCTTTCACACTGGAGATGGAGAATGGAGAACAGGTTGTAGTGTTGCTTATGGACACACAGGGGGCGTTTGACAGTGAGTCGACCGTCAAAGACTGTGCCACTGTTTTCGCACTCAGCACAATGCTCAGCTCAGTACAGGTTTTCAACATCACATCAAATATTCAAGAGGACGACCTGCAACATCTGCAGCTTTTCACAGAATACGGACGATTAGCCTTGGAAGACAGCGGTAGTAAACCATTTCAGGTGTTATATTTCCTCGTGCGTGATTGGTGCTATCCCTACCAATATGCCTATGGAACCGCCGGGGGTGATGTGCTCCTCGACAAACGCCTCCAGGTGAAGGAGGGTCAGCATGAAGAGTTGCAGCAGCTGAGGATCCACGTTAGGTCCTGCTTTGATCAGATCCGCTGCTTCCTCATGCCCCACCCTGGACTCAAGGTCGCCACCAGTCCACACTTCGATGGACGCCTTTCAGACATTGAGCCAGACTTTAAGACACAGCTCCGGCTACTTGTGCCGCTGCTGCTGTCGCCAGCACACCTAGTGGTGAAGGAGATCAACGGCTCGAAGATCACAGGACGGATGCTGGTCGAATACTTCAAGTCATACATCAAGATATACCAGGGCGACGAGTTGCCGGAACCAAAGTCTATGCTGCGAGCGACCGCTGAAGCCAACAACTTGGCAGCTGTTGCAGGGGCCAAGCACGCCTATGTGAAGGAGATGGAGCAGGTTGTGGGTGGAGACAAGCCGTACATTGGGCCGGAGCTGTTCAGGCGAGAACATGAACGTTGCAAGACATACGCACTGCGACTATTCGCGTCAACGCGGAAGATGGGCAGCAACAACTTCTGCCAGATCTACCTGAATAGACTGAACTTGGAGATCGAAGAGTTGGGAGAAAGCCTCACGAAACACAATGACAGCAAGAACATCTTTGCGGCGGCACGCACACCTGCCGTCCTCTTCGTCGTCATGACTGTCTGCTACGTCATATCGGGCGTGTTCGCCGTCGCCGGCATCGAGACCGCTTCCAATGCGATCAGTCTCATCATGTGCACAGCGCTCGCAGCCCTCTTCATGTGGGGCTACGTTCGGTATAGTGGCAACTACCGCGACATCGGGGTACAGATCGACACTGTGACGGATGTCATCTGGGAACTGGCATTGAACCCTGTTTGCATGAAGTTTGTACAAGGCACTGCAGGACAACCGCATGAAGACGGAAAGAAGATGAAGTAACACTGGTTGTCGGCCACCGTCCAATGAAATGACGCCTCCGCCATATCACTGCCATCTAAGCTTAGAAATGGCATCAAGGGGTACGACTCCTGCTGACTCTTTCTTGGCGACGCGGTGTCGATTGTCACCATCACTGGCAGGGATCGGGAGAATTATGATACAAGAGTAACAAATTTGTTGTTGGTCGACATGTCCTAACTGATGTGGAAAATGATGAGTCACCGACGACGCAGTGGCTGTCAGACGTGTCATGTGACTATGTAGGCACGTATGTTGGCATGTTAAGTTAGTGTAGTTTTCGTCGGTGTGTACTGGTTGGGTGCGTTAGGCATGTGTAGGGTTTGCAAACGAACAATGTTCTGATGTTTGGTCTACGCCTGCATTTTCGGCCAACAATCACAGACTAGCGAAACCACATTACAAAAAAGAAATAAAATGGAAACGAACGTTGACGACTCGGAACGGATATGTATTAATGTGTTGGTGTGCATATGTCAGATGTGTTGGTGCATGCACGTCAGATGTGTTGGTGTGCACCATGTCAGATGTGTTACTCAAACCCACTGGAATGTGCTGTAGTGTCGCCGCTATGTCACGACGGCTTTTACCTGACGATACTCTACCGATTCTTGCTGCTGAGAAATCAAATCTGTTCAATTTATTTGACGACAGTCCACAGATGCGGTTCTCCTGCGTCGGATGTGGCTTTGTAAAATGGCATCTGACAAATGTGTATATATCTGGTTGACGTTTCTTCCTGGCCCCGCCACCGTGTCCCATTGACACGCAGCGTTCACGCGGAAGAACACTAGTGATAGTCGGTTGTGCTGTGTCAGTTTTAGTGCAGTTTAAGTGGGAACAGAAAACAGTGTTAGGATCCACAATTATATTTCACGCCTGCACGGTTGCCTGTAGTCTTATTTCCACATTGAGGTAATTGTTAGTACTGTACAGAGGTCTATTTTCCTAGCATTGGCAGCGTTTCGAAATGTTGTTTGTTGACGGGATACTTTAAATGATTTTTTGTGGCAGTCATACTAAAGACACCACCAAGAATACGGAATGCATCATCTTTTCATATCTGTGCACATAACTCATTCATGCATGAGACTACGTTGTGTGCACTGTAATTATATGTATAAACATGTTGTTACCAATGAAACACTCAAGATGGAGTCTGTGTAGCACGTCAATGCTTAAATGTCTTGGGATTTGAAAACAATGAAAGTTGAGTTGTGTATTCTTTTTGAACCACTAGCAGTTTAATTTGAGTTTTGTGTCACGTCACGTGTTCGTTGTTTCAGTGCAATTTATAATACATGTGTCTGAAGACTAGAAAACCTTACGGAATGAACTATTTGCTCTATGGCTCAATTGACCGACTGCTGTTTAAAGATATGGTTCTCTGACAACATTCACACCTCAACCTGTACTGTGGTCAACCAACAATGACATTCAACAGCTTGGATATTATAAATGACATTAAAAACATTTACTGGTTAGGTGTGTTGGGATTGATATAATTTGTGGCTTGGTAATAGTATTTTGCATAATGACACAGGCAGACTTGTTCACACCCTGTTGATGTCATTACCCTCATGGCAGAACCAATATAGAAGAAAAACAGGAGCATTCCGTCCACACTGCTCAGACCAAGAACCATGTGGCTTGCGTATGTGTGTCTGTGAGTCCCGCTTGCATGTAACACTGTGATGTTGTGTACCGTTGTGATTCATATTTATTTGCCCCATGCAGATGTACAGTGATTTGTCAGTTTGTGATTACAGTGTGTGCGTGTTATTGTTAAAATTAATTTGGGGAACCAACTAAATTAAATACAGAATATGTTGTTGCTCTGGCGGTGTTGCTGGTCATTGCTATGTTTTGCTTCTGTACGAGTGATCCTATAGTGCAACGTGAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02263	GBP	Guanylate-binding protein, N-terminal domain	Domain	Interproscan
PF02841	GBP_C	Guanylate-binding protein, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003191	Domain	Guanylate-binding protein/Atlastin, C-terminal	Interproscan
IPR015894	Domain	Guanylate-binding protein, N-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR030386	Domain	GB1/RHD3-type guanine nucleotide-binding (G) domain	Interproscan
IPR036543	Homologous_superfamily	Guanylate-binding protein, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10751	GUANYLATE BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0007029	Biological Process	endoplasmic reticulum organization	Interproscan
GO:0051260	Biological Process	protein homooligomerization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-