Detailed information of Lsat_s019.g0232.t1 in Lamellibrachia satsuma Gene info
Gene IDAnnotationScaffoldStartEndStrand
Lsat_s019.g0232.t1RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEINLsat_scaffold01946890054714529+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF08145BOP1NTBOP1NT (NUC169) domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001680RepeatWD40 repeatInterproscan
IPR012953DomainBOP1, N-terminal domainInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR028598FamilyWD repeat BOP1/Erb1Interproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR17605RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEINInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000463Biological Processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006364Biological ProcessrRNA processingInterproscan
GO:0030687Cellular Componentpreribosome, large subunit precursorInterproscan
GO:0042254Biological Processribosome biogenesisInterproscan
GO:0043021Molecular Functionribonucleoprotein complex bindingInterproscan
GO:0070545Cellular ComponentPeBoW complexInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
------

TOP