Gene detail

Detailed information of Lsat_s017.g0271.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s017.g0271.t1	NUCLEAR HORMONE RECEPTOR	Lsat_scaffold017	5911759	5937553	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s017.g0271.t1

CATGACCAGTGGCCACTTGCTTAGAACTGACACGGCGAGTCGTGGTTTCCGAACCGGCCTCTACTGCGTTGCGAATTTGTTAGGAGTATTACGATGTGTTGAACGGAGACGATGGGAATACTGACTTTCACGATCATATGTCGTCGATTGTCATGAACTAAGTTGTTCATTGGTGCTGCCTTCACTGCCACCTGCTGGCCAACAGCTACACTACTCAATTTGATTGAGAAATATATGTGCAAGATAACAGCTTTAAGATCAGGAAGTGCTGTTGAGTCATTGACAGCTGAGCCAAGTTTAGCCTTCCTTTTGCTATGGTGACATCGGGTCAGTGACCTTCAACCTCCTCTGCCAGATGACTGACCTCCAACCCCTGTCACCTACCATGTCCCTAAGCCCGGCAACATCAGAAGTCATGGACGACCTGTGCCAACTCAGTCCAGACCTGTTGGTGGACTCGACAGAAGCGTCAGTTGGAAGCACAACGTCAGACAAGAAGTGCAAAGGCATCAAGCCAATGAAAGACAAGACATGTCTAGTGTGCGGAGACAAGGCCCTTGGCTACAACTTCAATGCTGTCTCCTGCGAATCCTGCAAGGCCTTCTTCAGACGCAATGCCTTCAAGGAAATCCGGGGTCGCTGCGAGGGGAAGTGTGAAGTGACAGTCGAGAGTCGTTCTTACTGCAAACACTGTCGGCTGCAGAAGTGCTTTGTCATCGGAATGAAACGCGAACTCATTCTCAATGAGCAGCAGAAACAGCAGAGACGTGTGAAGATCCATGAGAATCGGCTACGGAGACAGGGAGTGCCGGTGTCAACCTCCGCGGATGAGGGGCTGTCACCGGACAGCAAGTCATCTGATGACAACAGCAGCATCAAGTCGGAGTCAGAGCCGCATGTGCTGGCATCCGGCATCAACACTGAGGCACTGGACGGGCTGCAAGAAGACCAGAAGGAGAAGATCGTCGAAGTGATGAAGGCGTTCCAGTTGTCCTTCGATGCGCCGATGCCGTACCAGCCAATGACGGCGCCGTCGAGCACGGACTTTCTCAACATGGCTGACTCATCGGTGCGTCGGCTCGTCAAGATGGCGAAGCACCTGTCGATATTCCGCAAACTCGACCAGGAGGATCAGATCTGTCTGTTGAAGGGCGCGGTCGTTGAGGTGTTGATTCTGCGGTCGGCAAAAATGTTCGACACATCGCGACAGGGGTGGTCTGTCGTCAAAGGTGGGAAGCAACACAGCGTGTCAGCAGCATCTCTCAAGTTCGGCGACGACGAGAGCATGTCGTTCTTCGGGCAGTACCAGCGCTTCGCGACGACGCTGCTGAGTGCGACGCAGCGTGACAACGTCGTATTGATGCTCATGATTGTCATGGTCGTGTTGTCGCCCGACCGCAGCAGTCTGCAGGCGAAGGAGGTCGTTACGCAGGCACAGGAGATGTATGCCGACCTACTGATGGAGTACATCAACATGCGTTACCCAAAGGAACGCATGTTCGCCAAGGTGCTGCAGAAACTTGCGGACATCCGCGATCTCAATGAGACGCACACACGCATGCTCATGCATATGAAGGTTGAAGAACTCGAGCCGCTTGTCGTCGAGATATTCGACATGTCGTCGTGATCCCCAGTGGAGCCACATGTTGCTGACCACGAAACAGCTGCTGCATAGTCGTGTGTGTGTGCGTGAAAGTGACAAAACATGACACTATTGGACTGTATAACACTTGGATTGATGCCTTAAGGCATTGAATTGTGGGCATATGTGCTAGGGTCATGACTTGCTAGTGGAGTATATCAATGTGTATCACACGGAGAAATGCCTGGTGTCGCAGAAACTAGCAGACATTTGCGATCTCAACGACACGCACACGCGCAAGTATATGAAGGTTATATGAGACAAGGGTCATTACCTATAAATGTGTAAGGCCTCCATGGCAGTTGCTGTAACACTAGGATTTTCTCTGCCAAAAACATTCATGCTGGACAGTGTGACAGTGTCGTTGCACAGTGACAGATGGTTGCATCGAGCCGTGCAGCGGCAACGTTAACACAAACAGCAGCTAGTGACTCGTATTCACTCACCGTGTGTGCTTAAACGTAGATGTGGTGTTGGTAGGCGATGTTGTCATGTTGTTTGTCATCCATGTTGACAACTGTTGACCTCCTGGTGATTCACCGCTGGAGAATAGGGGACAGTTTCTTCGTGTTCATTCCGGTGTCACCTTATGGTTATCTCTTCTATGTGTCATATGAGTGTAGAACTTCTAGTGCATTGATGGCACAAACGCTATGAAATAGCAGTATTGTTTAACCTGGTTTCAAACAGTAAGACGTTTACTAAAATCCAAATAATGCCCGGTCCCCGAATGATAGTTCACTTTGTATATGTACAGGGCGCACTGAGCTCGGCTATGTTTCTGACTGGTTGTCTTGATTTGGGGTTAAAGAGATTTATTTCTGTACTGCATTTGAATTACTTCAGTATGAAGTGATTCTTTTTGTTTTATCATACACATGGCTCTCTAAAATGAAAAAAGTTTGCTTTGTGGATTTGTGCAATTGTTTGATGAAATGTGTGCAGTCATTGGAATATGAAAAAGTCTTCAGCAAACTGACAAATGATCAACTAATGCATATGTA

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	ESR-like
Transcription Factors Family	Miscellaneous
Transcription Factors Family	Miscellaneous
Transcription Factors Family	NGFIB-like
Transcription Factors Family	RXR-like
Transcription Factors Family	SF-like
Transcription Factors Family	THR-like
Transcription Factors Family	GCNF-like

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00104	Hormone_recep	Ligand-binding domain of nuclear hormone receptor	Domain	Interproscan
PF00105	zf-C4	Zinc finger, C4 type (two domains)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000536	Domain	Nuclear hormone receptor, ligand-binding domain	Interproscan
IPR001628	Domain	Zinc finger, nuclear hormone receptor-type	Interproscan
IPR001723	Family	Nuclear hormone receptor	Interproscan
IPR001728	Family	Thyroid hormone receptor	Interproscan
IPR013088	Homologous_superfamily	Zinc finger, NHR/GATA-type	Interproscan
IPR035500	Homologous_superfamily	Nuclear hormone receptor-like domain superfamily	Interproscan
IPR050234	Family	Nuclear hormone receptor family NR1 subfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24082	NUCLEAR HORMONE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0004879	Molecular Function	nuclear receptor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-