Gene detail

Detailed information of Lsat_s017.g0177.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s017.g0177.t1	DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A	Lsat_scaffold017	3744725	3791550	+

Gene Structure

More details in Jbrowse Sequence

CDS

Lsat_s017.g0177.t1

GGCTACTTGATATGCAACAGGGAAATTGTATCAGCTGATGTGGAAGACTTTGAGTACACCCCTCGCCCCGAGTTTGAGGGACCATTCATTGTTTACAATGAGCCTGATGAGATGAACACAATACAGCGATTCATTGATGACATTCTCGACGTGAAACCCAACATCTTTGTCACTTACAATGGTGACAGTTTTGACTGGCCATTTGTGGAGGCAAGGGCAGCGTTTCACGGGATTGACCTGAATCAGGAAGTTGGCTTTGAGAAAGACTCGCAGGGAGAGTACAAGTGTCGGTCAGCCATTCACATGGACTGCTACAGGTGGGTGAAACGAGACAGTTATTTGCCAGTGGGAAGTCAGAACCTCAAAGCCGTTGCCAAGGCCAAGCTGCGATACGACCCTGTGGAACTTGACCCTGAAGACATGTGCCGACTAGCTAACGAACAACCACAGGTGATGGCCACGTATTCGGTGTCGGACGCCGTTGCCACTTATTACCTTTACATGAAGTATGTTCACCCATTCATATTCGCACTCTGCACGATCATTCCCCTGGAACCAGATGAGGTTCTACGAAAGGGATCAGGCACCTTGTGTGAAGCCCTACTCATGGTCCAGGCATTCCACGGAAACATCGTCTTCCCAAACAAACAGGAGGCCGTCTTCAACAAGTTGACACATGATGGACATGTCCTTGACAACGAGACCTATGTGGGGGGACACGTTGAGGCCATCGAATCAGGCGTGTTCCGGTCCAATATTCCATGCCGCTTCCGAATGGTTCCTGAGGCGTTTCAGAACCTAATCGACAACGTGGAAAGAACATTGAAGCATGCAATTGAGGTAGAGGAGGGTATCCCGATTGACCAGGTGACAAACTTCGAAGAGGTGCAGAAGGATGTTGTTGAGAAGCTAACGATGTTACGAGATTGTCCAAATCGCCTCGAGAATCCCATCATCTACCATCTTGATGTCGCTGCCATGTACCCCAACATCATTCTCACTAATCGACTGCAGCCTCCTGCCATTGTTGACGAAGCAACGTGTGCCGCCTGTGACTTCAACAAACCCAACGCCACATGTCGTCGACAGATGCTCTGGGCGTGGAGGGGAGACTTCATGCCTGCCTCAAAGAATGAGTACCATCGCATACAGCAACAGCTGGAAAACGAAAAGTTCCCACCAGCCATGCCTGGGGGCAATCCACGTGCTTTCCATGAACTCAACCGAGAAGAGCAGGCGACATACGAGAAGAAACGTCTGGCAGATTATTGTCGCAAGGCGTACAAGAAGGTTCGTGTGTCAAGATTGGAGGACAGAACTGCAACTATCTGCCAACGTGAGAACTCGTTTTACGTTGGCACTGTGCGATCATTCAGGGACCGACGCTATGAATTCAAGGGTCTCACAAAGGTTTGGAAGAAGAAGGTGGCGGAAGCTGAGGCGAGTGGGGATGCGACACAGATCAAGAAGGCGAATGGCATGCTGGTTCTCTACGACTCGCTACAACTGGCACACAAGTGTATTCTTAACTCTTTCTACGGCTACGTCATGAGGAAGGGGGCGCGCTGGTACAGCATGGAGATGGCTGGGGTAGTGTGTTACACGGGGGCAAGTATCATCATGCAAGCCCGAGAGATAGTCGAACAGATAGGGCGCCCTCTGGAGTTGGACACGGATGGGATTTGGTGTGTTCTACCGGCCACTTTCCCAGAAAACTACGTCATCAAGTCAACACACCCAAAGAAGTCCAAAGTGACGATATCTTATCCTGGCGCTATGCTCAACGTGATGGTTCAGGCTAGCTACACGAACCACCAATACCACGAGCTGGTTGACGAAGCTAGACTTGAGTATAAAGTACACGCAGAGAACTCCATCTTCTTTGAGGTTGATGGGCCATACCTTGCAATGATTCTTCCGGCATCAAAGGAAGAGGGAAAGAAGCTGAAGAAACGCTACGCTGTCTTCAACTTTGATGGCTCACTAGCAGAACTGAAGGGCTTCGAAGTGAAACGTCGTGGTGAACTGCAGTTGATCAAGATCTTTCAGTCGTCAGTATTCGAAGCATTTCTGAAAGGCACGCAGCTCGATGATTGCTACGCAGCAGTTGCTAAAGTGGCTGATTACTGGCTCGATGTACTCTACAGTAAGGCAGCAAACATGCCAGACACGGAACTCTTTGAGCTGATCTCAGAGAATCGCAGCATGTCTCGTAAACTGGAAGAGTACGGCACGCAGAAGTCAACATCAATCAGCACCGCCAAGCGTCTGGCCGAGTTCCTTGGGGATCAGATGGTGAAGGATGCGGGATTGAGTTGTCGGTTCGTGATCTCACGCAGACCCGAGGGAACTCCCGTCACTGAGAGGGCGATCCCGCTGGCGATCTTCCAGGCAGAACCCAGTGTGAGGAAACACTTCCTCAAGAAATGGCTGAAGATGCCTATTCTGGACGATTTTGACATCCGAAATATACTGGACTGGAACTACTACATCGAGAGACTTGGCAGTGCGATTCAGAAGATCATCACCATTCCAGCTGCCTTGCAAGGGCTTGCGAACCCAGTGCCGAGAATCGCACATCCTGATTGGCTACACAAGAAGCTGTTGGAGAAGAACGACATTTACAAACAGAAGAGAATTAACGAGATGTTTACGGCTGCTCCGAAGTCTCGGCAACAAGAGGAAGCAAATGAGTCAATGGAGTTATTCGACAGCTGCGACACTGGTGCCGTCTCAGAGCCAGTCGACATTGAGGACTTGGGAGGCAGCACTAGTGGCCCTCTCCGTGGCTGGCCAATCGTCTCTGTGGCAAGCAAACGGAAGCTGGACAGTTCTCATGATGACATGACACAGAGCTGGAGGGATGTGCTGGGGCCTCAACCTCCCATGGGAAAGACCCGGGAGGAAGTCCAGACGTGGCTCGCGTACCAGAAGAGGAAGTGGGAACTCCAGCGGAAGCAACGACATCAACATCACAAGCGACGACGACTGAACAACAATGACGTCGACGACAGTGACGCGGTTGGCATTGGTGGCGTTGTGCGTACGGGCACCGCCGCTGGTCTTGGCGGGTTCCTTCGACGCAAAACGAGAACGATGCTGGACACGCCGTGGCAGATCATCCAGATAGCAGAGACGGGCCATCCAGGTCTGTACCGACTGTGGGCTCTGATTGGCTCAGACCTGCACGCGGTCAAACTGAGCGTGCCGCGAATATTCTACGTGAATCAGAAGACCCCCAAGGAGGGGGAGGGAGCACTGTGGAGGAAGGTCAATCGAATCCTCCCAAGGTCACATCCCGTCTTCAATCTGTACGAGTATTCTGTGCCCGAGGACGTGTACCAGGAACACATGAATGAGATCACTGCCGACCTGTCATCGCCCGACATTGAGGGTGTGTACGAGACACAGGTTCCTCTCTTGTTCCGAGCCCTCCTCAGACTCGGGTGTGTGTGCGTCGTCAACCGACAGTTTGTGAAAACGCTTGCTGGCAAGGAGACGGACACATTTGACTTGGAACACCTGAACTTCAAAACCCTGGCACAGTACTCGTACCTGGAACCTGGCTCGATGAAACACCTCTACCTTTACCATCATGTTTCGGGCCAGAAACAAATGATTGGTCTCTTCATGCCGATGATGAAGAAGGCATCCATCTTTGTTGTTGACACAGTGCGAACCAATCAGATGCCAAACCTCACTGCCCTGTACAATGCTGAACACGGTGCAAAACTTAGCAAGGGCGTGGATGAAGAATTGCTTCCAGCACCGGGCCACACATTTGAGATTCGAGTTGAAAAGGATGTTCGCCAGGTGCATCGTGGGATACAGAGGCTGCTGATGGCTTACAAAGACGAGAAACGTGGTCCAACGTTTATCGCTGTCCAGTCTCCCCAAGATTTCCAGCGTCTGACAACCAGTATGCCCGCATTGTGTGACTTCCCCCTGGTGCCTCTCCACATCAGTGACGATGATAATATGTACAGCGTCCTTGACTGGCAACGTGTTGGCTCCCGCAAGATGTTGCAACATTACCTCAACGTTGACATGGTTCTTCAGGTGGTGCTTGAGCAGTGCCGCTATTTCCACATACCGGTGGGGAATATGCCGCTGGATACCACCATGTTTGGCTGCGACCTGTTCTTCGCTCGACATTTACAGAAGCACAGCCACGTGCTCTGGTGTTCCCCGAGTGAGCGACCCGACCTTGGGGGAAAGGAAGCAGACGACAATCGGCTGCTGACTGAGTTCGAGGAAAGTAGTTCAGTTGAGGTGAACACGCCAGGGTTTTTCAACACGGTGTGTGTTGAACTGGACATGGCCAGTCTGGCGGTAAACACACTCATGCAGTCGGGACATGTGAATGACTACGAGGGCGCTAGTGCAGCAAGCTTTGATGTGATGCCGCAGACCTCATTAGAGGACATGATCCAAGGTCAAGGAGCCGCTACCATGCTGGCGAGTTATGACGAGACCGCACTTTGTTCCGTCACTTTCAGGATCCTCAAGAGTATGGTCCATGGGTGGATCCGAGATGTCACCACCTACCAGAATGTCTTCGCTGACCATCAGATCATGCACTTCTACCGGTGGCTGCGTGCGCCGCAGAGTCTGTTGTATGAGCCGGCGCTGCGCCGCTCCCTCCACAGTCTCATGAGGAAGCTGTTCATGCAGTTGATTGCTGAGTTCCGTCGACTCGGCTCCGTCATCGTTCATGCCAACTTCAACCACCTCATCATCTCGACAAAGAAGCGACGTGTCATTGATGCACTCGCCTATGTCGAGTACATCACCAACAGCATCCGGTCACGTGACCTGTACCAGATGATTGACATCTCCTACACCCAGTGCTGGGAGGCGCTCATGTGGCTGGATTCGGCCAACCACGGAGGAGTTAAGGGAAAACTGCCCAAGTCTGTCGTCAACCAAGATCCCGCCTGCGTCTCTGAGAGTCAGGAAGTGGGAGGGGATCCTGCGGAAGACAGGGAGGCCGGGAGCAGCGAGGAGGAAGGGGAAGAACCCCGGGCTAGGGAAGAGACGGAAGAAGTGTTGAACCAGTCCGACGACGATGAGGATGTGCCAGACATCGAAATGAATTGGAATCTGATGAGATTTCTGCCGGTGGCTGCAGCCTGTCAGACAAACTACAATATGATTGTAGCGGGTTACATCCTAGCTGTCTACCAACACGGCGAGGAGACAGGAACAGGGGCCACTCCCGGCAGCACCCCGGTGCGGCGGAAAAGTAACTCCCAGACACAGTTGGCTGGCAGTAGCGACACACCAGAGCTCGTTGATTATTGCCAGAAGTTGGTTCAAGAAGACATGTGTCAGCAGATGTTTCTAATCACCCAGAAGATCCAGAAGAAGCTGGCGTATCGCCGTGGCGATCACAACGAATTGTCGAATGAGTTCCCAACGCTCCCTGGATCACATCTGTCATTGCGAAACCCAGCATTGGAATTTGTGAAGTCAGTTTGCCATGTCCTCTCGTTGGACGCAAACATTTCGCAGCAAGTTCGCAAGATGAAGCGCGACTTGCTCAAGTTGATCAACGTTCGCGAGTTCTCCGACGAAGCTGTCTTCAAAGATCCTTGTCTCTCTTATGTTCTCCCAGAGGTGATCTGTAAAGGATGCAATCACATTCGCGATCTTGATCTCTGCCGAGATCCGTATCTGCCAGCAGATGGCACCACAGGTGCCACCTGGGCTTGTGTCCAGTGTAAGACGTTGTATGACTTGGAGGAGATAGAACAGTCGTTGCTGGACGCTGTCCACCGCAAGTCCATGGCCTACGTTCTACAGGATCTTGAGTGTGAAAAATGTCACGGAGTAAAAGAAGCAAACCTGTCAAGTTACTGCAAATGTGCTGGAAGGTTTAAGACATCCATATCAGTGGATGGCTTCGCTCATAAGATGCTGACATTCCGAAATATTGCCAGACACTATGACATGTCATTACTTGAGGAGACGGTGGACTGGCTGCTGAAGAGGAACCCACAAGTGTCGACTGCCGTCTAG

Transcript

Lsat_s017.g0177.t1

Protein

Lsat_s017.g0177.t1

GYLICNREIVSADVEDFEYTPRPEFEGPFIVYNEPDEMNTIQRFIDDILDVKPNIFVTYNGDSFDWPFVEARAAFHGIDLNQEVGFEKDSQGEYKCRSAIHMDCYRWVKRDSYLPVGSQNLKAVAKAKLRYDPVELDPEDMCRLANEQPQVMATYSVSDAVATYYLYMKYVHPFIFALCTIIPLEPDEVLRKGSGTLCEALLMVQAFHGNIVFPNKQEAVFNKLTHDGHVLDNETYVGGHVEAIESGVFRSNIPCRFRMVPEAFQNLIDNVERTLKHAIEVEEGIPIDQVTNFEEVQKDVVEKLTMLRDCPNRLENPIIYHLDVAAMYPNIILTNRLQPPAIVDEATCAACDFNKPNATCRRQMLWAWRGDFMPASKNEYHRIQQQLENEKFPPAMPGGNPRAFHELNREEQATYEKKRLADYCRKAYKKVRVSRLEDRTATICQRENSFYVGTVRSFRDRRYEFKGLTKVWKKKVAEAEASGDATQIKKANGMLVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVCYTGASIIMQAREIVEQIGRPLELDTDGIWCVLPATFPENYVIKSTHPKKSKVTISYPGAMLNVMVQASYTNHQYHELVDEARLEYKVHAENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFNFDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTQLDDCYAAVAKVADYWLDVLYSKAANMPDTELFELISENRSMSRKLEEYGTQKSTSISTAKRLAEFLGDQMVKDAGLSCRFVISRRPEGTPVTERAIPLAIFQAEPSVRKHFLKKWLKMPILDDFDIRNILDWNYYIERLGSAIQKIITIPAALQGLANPVPRIAHPDWLHKKLLEKNDIYKQKRINEMFTAAPKSRQQEEANESMELFDSCDTGAVSEPVDIEDLGGSTSGPLRGWPIVSVASKRKLDSSHDDMTQSWRDVLGPQPPMGKTREEVQTWLAYQKRKWELQRKQRHQHHKRRRLNNNDVDDSDAVGIGGVVRTGTAAGLGGFLRRKTRTMLDTPWQIIQIAETGHPGLYRLWALIGSDLHAVKLSVPRIFYVNQKTPKEGEGALWRKVNRILPRSHPVFNLYEYSVPEDVYQEHMNEITADLSSPDIEGVYETQVPLLFRALLRLGCVCVVNRQFVKTLAGKETDTFDLEHLNFKTLAQYSYLEPGSMKHLYLYHHVSGQKQMIGLFMPMMKKASIFVVDTVRTNQMPNLTALYNAEHGAKLSKGVDEELLPAPGHTFEIRVEKDVRQVHRGIQRLLMAYKDEKRGPTFIAVQSPQDFQRLTTSMPALCDFPLVPLHISDDDNMYSVLDWQRVGSRKMLQHYLNVDMVLQVVLEQCRYFHIPVGNMPLDTTMFGCDLFFARHLQKHSHVLWCSPSERPDLGGKEADDNRLLTEFEESSSVEVNTPGFFNTVCVELDMASLAVNTLMQSGHVNDYEGASAASFDVMPQTSLEDMIQGQGAATMLASYDETALCSVTFRILKSMVHGWIRDVTTYQNVFADHQIMHFYRWLRAPQSLLYEPALRRSLHSLMRKLFMQLIAEFRRLGSVIVHANFNHLIISTKKRRVIDALAYVEYITNSIRSRDLYQMIDISYTQCWEALMWLDSANHGGVKGKLPKSVVNQDPACVSESQEVGGDPAEDREAGSSEEEGEEPRAREETEEVLNQSDDDEDVPDIEMNWNLMRFLPVAAACQTNYNMIVAGYILAVYQHGEETGTGATPGSTPVRRKSNSQTQLAGSSDTPELVDYCQKLVQEDMCQQMFLITQKIQKKLAYRRGDHNELSNEFPTLPGSHLSLRNPALEFVKSVCHVLSLDANISQQVRKMKRDLLKLINVREFSDEAVFKDPCLSYVLPEVICKGCNHIRDLDLCRDPYLPADGTTGATWACVQCKTLYDLEEIEQSLLDAVHRKSMAYVLQDLECEKCHGVKEANLSSYCKCAGRFKTSISVDGFAHKMLTFRNIARHYDMSLLEETVDWLLKRNPQVSTAV*

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00136	DNA_pol_B	DNA polymerase family B	Family	Interproscan
PF03104	DNA_pol_B_exo1	DNA polymerase family B, exonuclease domain	Family	Interproscan
PF08490	DUF1744	Domain of unknown function (DUF1744)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006133	Domain	DNA-directed DNA polymerase, family B, exonuclease domain	Interproscan
IPR006134	Domain	DNA-directed DNA polymerase, family B, multifunctional domain	Interproscan
IPR006172	Family	DNA-directed DNA polymerase, family B	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR013697	Domain	DNA polymerase epsilon, catalytic subunit A, C-terminal	Interproscan
IPR023211	Homologous_superfamily	DNA polymerase, palm domain superfamily	Interproscan
IPR029703	Family	DNA polymerase epsilon catalytic subunit	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR042087	Homologous_superfamily	DNA polymerase family B, thumb domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10670	DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0000278	Biological Process	mitotic cell cycle	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan
GO:0006272	Biological Process	leading strand elongation	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006287	Biological Process	base-excision repair, gap-filling	Interproscan
GO:0006297	Biological Process	nucleotide-excision repair, DNA gap filling	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0008310	Molecular Function	single-stranded DNA 3'-5' DNA exonuclease activity	Interproscan
GO:0008622	Cellular Component	epsilon DNA polymerase complex	Interproscan
GO:0045004	Biological Process	DNA replication proofreading	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-