Gene detail

Detailed information of Lsat_s017.g0169.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s017.g0169.t1	30S 40S RIBOSOMAL PROTEIN	Lsat_scaffold017	3550387	3558251	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s017.g0169.t1

GATCAGTATGCCTACACAACTTCGTTTCTTGTTTTATCACCAGGTGGCATAACAGTAGTAAACATGGTGCGAAAATTAAAGTATCACGAGAAGAAACTTCTCAAAAAAGTAGACTTTATCTCGTGGGAAGTCGACAACAATTTACACGAAATAAAAGTTATGAGAAAGTACTACATACAAAAGCGAGAAGATTATACAAAATATAACAAGCTATCAAGACACATCCGTGAATTGGCCAAGAAGATTAAAGAGCTCGATGTCAAAGATCCGTTTAGGATGGAAGCAACTTCACACTTCCTGGAGAAACTACACTCGATGGGGTTGGTTCCCACAAAGAGGAGTCTGCAGCTGTGTAATGAAGTGTCTGCAAGCTCCTTCTGCAGACGTCGACTGCCTGTGGTGATGGTGAGGAGCCATATGGCTGAGAACCTGAAAGCTGCAACAACCTTCATAGAAGCTGGCCATGTAAGAGTCGGACCAGAAGTTATTACAGACACAGCCTTTCTTCTTACAAGGAGCATGGAGGACTTTGTGACGTGGACCGACACGTCAGCCATTAGGAAACATGTCATGGAATACAATGAAATGAGAGATGATTTCGACATGCTTGCATAAAGATGTGCTTTCCGAAGAATTTGACAACCACTAGGATATGGCTGAGATGCAAGGCACATTTTGAGGAACGTTTAATTTACACCATCCATCAACTTTTTCTATAGTTGTAACACACAAGTATCTGCATTTAAAAAGTTTATTAGTCATGTTGATCAAACATGCGATTAAATTCAATATTATCCCATTGCATGGAACTAGGAATAAACCGGCGTTTATTACATGGTTATGTTCTAGCACAATGAACAAATATATACTTAACTGAGCAATAATTTTATCATGTTTTTTCTTTAGCGATGTATATCTGTGTGTTGTTATTGGATAAATTATTTTTACATGAAACTTGTCTTTGAAGCCTCACCACATGTAGGAGGGTTGGGTTTGTTACGTGGCAGTTGTTGTCACCAAAAGTAGGACTTTAGTAGGTTAATGGTATTGTCTCGATAAAACCTATGTTCTTCATTGAAGTTAATTACTGCCAACATGATGCGAGTTGCTGGCATCATTTTGGAGCGGTCTGTGGATATTTTTTATTTCACTCCATGTCTCCTTTCAGGATTTCAAGTAATTAAATGATTAAGCATTAAGTGTCATTATAGCAGAAATAAAATAAAGTAAGTTTAAATGGGCTTAATCTATCTTACTGCTGAAGTTAGTTACTCTCAGTTAAGCCTGGCTAAAAAGCAAGCAAGACATTTTATAAATCTGTCTACACTGGATACAAAGGAAACTAAAAGAAAGCAAATGTCACAATATTAAATATTGTTTATTTTTACATCAATACCTACATGAAAATGGATTTTGCAGTTTTATAAATAAATTAGCAATACATACATACAGAAGTCTTACAGACACAAAGAACCTTACAAAATTACATGCTTTCATCGTAATAAACATACATCTTCAATCAAGACGGCCTCAGCAATGTGCTGACCATAGTAACATGATATTTTCTTAAATACGACAAGACACGTTCAAAAATATCATTTAAATTCCACTGTGAATGAAAATCTATAGTGGCTATCCTCAGCTCCAGGTTTCAATATCTCCCTCATCTCTCAATGCCCAAATTATGGAGTTTCCTTTGGCTTGATACTGTTCATTTTACTTGATGTAACAATGGATCGATGTGCAAATTCCCACTTGGGGCTCTATATTCCCACTAACAAATTTACCCTGAGGGAGCTTCATTCATCCTTCCCCCACATTGCATTGCACAAACAACAACCCAGTAACAGGGATGAGATCCGTCTGAAATCTTCCCAGATTGTAAGTTTGTGGGATGGCAAATACTCTCTATTCTTTCACATTTAAAATCCTGCTGTTCCAAAAAAACAACTCATGCCCTGATCGATAGTAGTAGATACATATTATAATTATGTACATTGCACAGAGTAGTATACAAAGCTTGCCTGAATACAATGCCTCTTGGTGGGACTAGACCGATGATGACTGCAAAATATACAGACTTACTCGCACATTGGTAAAAATATAGCTGGAAGCACTTACATAGAATAAATACATAGGTTGCATATAAACATTATGTACAGTTTGGTTGTTTGTTGATCTCACCATGAAATAAATAAATGCTGCAGTAAGATTGCCATGTTTGGGTGGGAATCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00163	Ribosomal_S4	Ribosomal protein S4/S9 N-terminal domain	Family	Interproscan
PF01479	S4	S4 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001912	Domain	Small ribosomal subunit protein uS4, N-terminal	Interproscan
IPR002942	Domain	RNA-binding S4 domain	Interproscan
IPR022801	Family	Small ribosomal subunit protein uS4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11831	30S 40S RIBOSOMAL PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan
GO:0019843	Molecular Function	rRNA binding	Interproscan
GO:0030515	Molecular Function	snoRNA binding	Interproscan
GO:0032040	Cellular Component	small-subunit processome	Interproscan
GO:0034457	Cellular Component	Mpp10 complex	Interproscan
GO:0042274	Biological Process	ribosomal small subunit biogenesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-