Gene detail

Detailed information of Lsat_s017.g0138.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s017.g0138.t1	ATP-DEPENDENT RNA AND DNA HELICASE	Lsat_scaffold017	3190150	3222294	+

Gene Structure

More details in Jbrowse Sequence

CDS

Lsat_s017.g0138.t1

ATGGCTACATTTGACCCTAGCGTTGAGGTGAACTTTGACCTGCTACAAGTGGGTTTGGATGGCCAGATTGAAGCTATCCCTCCCTGTGGTGACAATAAACCTGGGTTACCCCTGGCAACGGTGCCTGTAGGGTTGCCACCAGTTCTGCCAACACTAACAGACACTCTGGAAGAATTCCTCACCTGTCCTGAGAAGACACCCATTCACAACCTCGAAAAATCACAGAAATTCTGGCCAAGAAGGCCATGTCCAGAGTCGCTGTACACTGTGGATGTCTGTCCACTGCAGACAAAGATTGTGGTCGACAGAAACCCGACAACAGGTGAACTGCTCGGCTTTAAAGAGGAATTCCTCAATACGACCGGGGCATCTGCAGCAAATTCAACCTCTCTGAGACGACCACCAGGGCCACCAAGTGAAAGCATCCGGGGCGCTACGACTAACTACCCTTTCTGGCCTGGTGGGTTGGATGAACCAAACATGCGCATGTTAAAAGGCTCCACAGATTCTAAAGATATTAATTTTGATGAAGATCTGTTGGTGGTGCCTCCAGGGTTTTCTACTGGAATGCAATTTGAGAAGAAAAAACTGGGTAGTTTTATGAGCGGTACAGGAGACATGACACAGTTCAATCTCACAGACATCTTGGCTTCGGCAGATGATATCGAACTCCTTGATGATGACGTTGATGATGATATCAGTGATGTCAAAAAAGAGGAGGATAATAATGGAGAAAGAGGAGACTTGGGGAATGAAGAACAGAGGAAAGTCACACAAGAATTGGAAAATATTGACTACATCATTAAGCTGGACAGTAGAAGTGCACTGACTGAAGAGAATGCGTCCGCGATGAGCGCAAGCAAAGACCAGTGGGCAATCATGCTTGACTCGACGACACCCATCAATGACTTCTACAAACGCATTCCTGACATGGCTTATAAGTGGGACTTCGAGCTGGATGTCTTTCAGAAACAGGCCGTTCTCTGTCTAGAGAACCACCAGAATGTGTTTGTTGCCGCACACACGTCAGCCGGCAAGACTGCAGTAGCCGAATACGCTATTGCACTTTCCATGAAACACATGACCAAGACGATATACACATCCCCAATCAAGGCCCTGTCTAATCAGAAGTACCGGGACTTCAAAGACACGTTCAAAGAGGTTGGGCTGATAACAGGAGATGTCCAGATATCACCGGAAGCTCCCTGTCTTATCATGACGACTGAGATTCTCCGGTCTATGTTGTACAACGGATCGGATGTGATCCGTGATCTTGAATGGGTGATCTTTGACGAGGTCCATTATATCAATGATGCAGAGAGAGGTGTTGTGTGGGAGGAAGTGCTTATCATGCTGCCAAAACATGTCAAGTTGGTCTTGTTGAGTGCCACTGTGCCAAATACGCGCGAGTTCGCCAGCTGGATAGGGCGTACAAAGCAGAAGCCGGTGCATGTAGTGAGCACACAGAAGCGTCCAGTCCCTCTAGAGCACTACCTCTACACTGGCAATAGCACAAAGACGAGCAATGAACTCTTCCTCATTCTCGACTCAAAGAAGAACTTCGTTGTGCCAGGGTACAACAAGGCTCTGAATGCAAAGAGGGAACGTGCCAGTAAGTCATCCCAAAGCTACGGAGCAAAAGGCACAAGAGGAGGAAACCCACATCAGGACCGGAACATGTGGCTGTCACTGATTGAGATGCTGAGGAAGAAAGAGAAGCTTCCCGCAGTCGCATTCATCTTCTCGCGTAAGCGCATAGACGAGACATCGCAACAGCTTCAGAGCATTGACCTCCTGACCAGCAGCGAACGCAGCGAAGTGCACGTCTTCTTCCAGAAGTGCATATCCAAGTTGAAGGGCAGTGATCATGATCTGCCCCAGGTGAAACAGATGCAGGAGTTGCTGAAGAGAGGTCTAGGGGTGCATCACAGTGGGGTGTTGCCCCTGCTCAAGGAGGTCGTGGAGATGCTCTTTCACAGAGGCTTAGTTAAGATTCTGTTTGCGACCGAGACGTTTGCCATGGGGGTCAACATGCCTGCACGACTCGTTATCTTCGACTCGATCCGCAAGCATGATGGGAAGGAACTGCGAGACCTGCTGCCGAGCGAATACATCCAGATGGCAGGACGGGCCGGGCGACGCGGACTTGACGCCACCGGCACCGTCATCATCCTATGTAAGGGGGACGTCCCTGAAATGGCCGACCTACACAAAATAATGCTCGGCAAGCCTACTCTACTTCAATCTCAGTTCCGTCTCACCTACTCGATGATTCTGAATCTGATGCGAGTGGAGCAAATTCGGGTTGAAGATATGATGAAACACAGCTTCTCCGAGTACAACACACAGAAGGATGTCCAACGCCACCAGGTGGAGCTGAAGGAGGTCATGGAGAAGCTCACTACAGTACCGGATGTGCTCGATTACAGCGGCGATCTCGAGGCGTATTATGATGCGTGTGAGGAGTACTATGGGCTGCGCTTGGATGTTCATGAGACAGTCATGTCCCATCTGCAGACACTGAAGGCTTTGTGTCCAGGCCGAGTGATAGTTACTGATGTTTACTTGCAGGAGACAGTCATGTCCCATCCGCAGACACTGAAGGCCTTGTGTCCAGGCCGAGTGATAGTTACTGATGTTTACTTGCAGGAGACAGTCATGTCCCATCTGCAGACACTGAAGGCTTTGTGTCCAGGCCGAGTGATAGTTACTGATGTTTACTTGCAGGAGACAGTCATGTCCCATCCGCAGACACTGAAGGCCTTGTGTCCAGGCCGAGTGATAGTTACTGATGTTTACTTGCAGAAGACAGTCATGTCCCATCCGCAGACACTGAAGGCCTTGTGTCCAGGCCGAGTGATAGTCACTGATGTTTACTTGCAGAAGACAGTCATGTCCCATCCGCAGACACTGAAGGCCTTGTGTCCAGGCCGAGTGATAGTCACTGATGTTTACTTGCAGGAGACAGTCATGTCCCATCCGCAGACACTGAAGGCCTTGTGTCCAGGCCGAGTGATAGTCACTGATGTTTACTTGCAGAAGACAGTCATGTCCCATCCGCAGACACTGAAGGCCTTGTGTCCAGGCCGAGTGATAGTCACTGATGTTTACTTGCAGAAGACAGTCATGTCCCATCCGCAGACACTGAAGGCCTTGTGTCCAGGCCGAGTGATTGTCACAGACACACCTGAGCACCACAACGTCCTTGGTGTGGTCCTGGCTAGTGGACGTGACAGGACGTACACTGTCCTGATTGTGTGTGGACAGGACGAATCCACTGAGAAGGACATTGACCAGTGTGACCTGTCAACGCCGCGGCCGCTGGTGGCCAATCAGCTATATCTTCCTGAAGGACTATGTGGTCATCGAGTGGTCATTCTCAAGACACAGATCAGTAGTGTGACGACGTCCACAATCAAGGTGAACGGCGATAAGATTATCAATGATTATAAGAAACGGCAGCAGCCAAGATTCAGAGATGACCCCCCTGGTCAGTCAGCCAGCGTTGCCACCCAGGAGCTGGTCAGACTGATAGAGTCACATCCGGATGGACTGCCAGAGCTGGATCCAATGCGGGACCTGCACATCCAGAATATGGATCTGGTGGAACAGTTCCAGAGGATCAACTTCCTTAAGTCTTCATTGCTTAGCAGCTATAAGTGTGTTGATGATCCAAACTTCATGGAGCACTTTGACAAGGTGCGCCATCGGAAACAGCTGCTGCAGCAACAGAAGAAACTCATCTTCCTCCTCTCTGATGCCAGTCTCCAACTACTACCAGAATTCCAACTCAGGGTCAAGGTTCTACGGGAGTTGAATTACGTTGACGCGGCAGGAACGGTGCAGCTGAAGGGGAGGGTGGCATGTGAGATCAGTGGCCATGAACTCATCATTACAGAACTCATCTTTCACAACATGCTTACCCCTCTCCACCCTACGGAGATCGCCTCCGTTCTGTCTAGCGTTGTCTTCCAGGGGCGCCGACAAAACAAGGACAAGGAGAACTCCAGTCTCGCCGACGTGAAGGAGAAGTTTTTGGAGATAGCAACAAAGATTGGCGAATTACAACACAGCAGTGGCCTTGACATTCAGGTGGAGGACTACGTGGACGAGTTCAACTTTGACCTCATGGACGTTGTCTTTGAGTGGGCTCGGGGCGTCAAGAGCTTTGCTGAGATCATGCAGATGACCAGCGTCCAGGAAGGAATCATTGTGCGGTGTATCCAGAGACTGCACGAGACACTGAGAGACGTCCGTAACGCAGCTCGCATCATTGGCGACCCAATCCTTTACCAGAAGGCAGAGGAGGCTTCAATGCTCATCAAACGGGACATTGTCTTTGCTGCTAGTCTCTATGTCCAGTGA

Transcript

Lsat_s017.g0138.t1

AACCGGAAATAAAACATCTCGACGCGATGAAGTAGTCTACGTTAACCAGATCTTACAAACCCCCTGAAATAAAATGTTTCCCAGGGTGGTGTCCTGAAAGCAACGCCTTAAACTCAGCAGCATGGCTACATTTGACCCTAGCGTTGAGGTGAACTTTGACCTGCTACAAGTGGGTTTGGATGGCCAGATTGAAGCTATCCCTCCCTGTGGTGACAATAAACCTGGGTTACCCCTGGCAACGGTGCCTGTAGGGTTGCCACCAGTTCTGCCAACACTAACAGACACTCTGGAAGAATTCCTCACCTGTCCTGAGAAGACACCCATTCACAACCTCGAAAAATCACAGAAATTCTGGCCAAGAAGGCCATGTCCAGAGTCGCTGTACACTGTGGATGTCTGTCCACTGCAGACAAAGATTGTGGTCGACAGAAACCCGACAACAGGTGAACTGCTCGGCTTTAAAGAGGAATTCCTCAATACGACCGGGGCATCTGCAGCAAATTCAACCTCTCTGAGACGACCACCAGGGCCACCAAGTGAAAGCATCCGGGGCGCTACGACTAACTACCCTTTCTGGCCTGGTGGGTTGGATGAACCAAACATGCGCATGTTAAAAGGCTCCACAGATTCTAAAGATATTAATTTTGATGAAGATCTGTTGGTGGTGCCTCCAGGGTTTTCTACTGGAATGCAATTTGAGAAGAAAAAACTGGGTAGTTTTATGAGCGGTACAGGAGACATGACACAGTTCAATCTCACAGACATCTTGGCTTCGGCAGATGATATCGAACTCCTTGATGATGACGTTGATGATGATATCAGTGATGTCAAAAAAGAGGAGGATAATAATGGAGAAAGAGGAGACTTGGGGAATGAAGAACAGAGGAAAGTCACACAAGAATTGGAAAATATTGACTACATCATTAAGCTGGACAGTAGAAGTGCACTGACTGAAGAGAATGCGTCCGCGATGAGCGCAAGCAAAGACCAGTGGGCAATCATGCTTGACTCGACGACACCCATCAATGACTTCTACAAACGCATTCCTGACATGGCTTATAAGTGGGACTTCGAGCTGGATGTCTTTCAGAAACAGGCCGTTCTCTGTCTAGAGAACCACCAGAATGTGTTTGTTGCCGCACACACGTCAGCCGGCAAGACTGCAGTAGCCGAATACGCTATTGCACTTTCCATGAAACACATGACCAAGACGATATACACATCCCCAATCAAGGCCCTGTCTAATCAGAAGTACCGGGACTTCAAAGACACGTTCAAAGAGGTTGGGCTGATAACAGGAGATGTCCAGATATCACCGGAAGCTCCCTGTCTTATCATGACGACTGAGATTCTCCGGTCTATGTTGTACAACGGATCGGATGTGATCCGTGATCTTGAATGGGTGATCTTTGACGAGGTCCATTATATCAATGATGCAGAGAGAGGTGTTGTGTGGGAGGAAGTGCTTATCATGCTGCCAAAACATGTCAAGTTGGTCTTGTTGAGTGCCACTGTGCCAAATACGCGCGAGTTCGCCAGCTGGATAGGGCGTACAAAGCAGAAGCCGGTGCATGTAGTGAGCACACAGAAGCGTCCAGTCCCTCTAGAGCACTACCTCTACACTGGCAATAGCACAAAGACGAGCAATGAACTCTTCCTCATTCTCGACTCAAAGAAGAACTTCGTTGTGCCAGGGTACAACAAGGCTCTGAATGCAAAGAGGGAACGTGCCAGTAAGTCATCCCAAAGCTACGGAGCAAAAGGCACAAGAGGAGGAAACCCACATCAGGACCGGAACATGTGGCTGTCACTGATTGAGATGCTGAGGAAGAAAGAGAAGCTTCCCGCAGTCGCATTCATCTTCTCGCGTAAGCGCATAGACGAGACATCGCAACAGCTTCAGAGCATTGACCTCCTGACCAGCAGCGAACGCAGCGAAGTGCACGTCTTCTTCCAGAAGTGCATATCCAAGTTGAAGGGCAGTGATCATGATCTGCCCCAGGTGAAACAGATGCAGGAGTTGCTGAAGAGAGGTCTAGGGGTGCATCACAGTGGGGTGTTGCCCCTGCTCAAGGAGGTCGTGGAGATGCTCTTTCACAGAGGCTTAGTTAAGATTCTGTTTGCGACCGAGACGTTTGCCATGGGGGTCAACATGCCTGCACGACTCGTTATCTTCGACTCGATCCGCAAGCATGATGGGAAGGAACTGCGAGACCTGCTGCCGAGCGAATACATCCAGATGGCAGGACGGGCCGGGCGACGCGGACTTGACGCCACCGGCACCGTCATCATCCTATGTAAGGGGGACGTCCCTGAAATGGCCGACCTACACAAAATAATGCTCGGCAAGCCTACTCTACTTCAATCTCAGTTCCGTCTCACCTACTCGATGATTCTGAATCTGATGCGAGTGGAGCAAATTCGGGTTGAAGATATGATGAAACACAGCTTCTCCGAGTACAACACACAGAAGGATGTCCAACGCCACCAGGTGGAGCTGAAGGAGGTCATGGAGAAGCTCACTACAGTACCGGATGTGCTCGATTACAGCGGCGATCTCGAGGCGTATTATGATGCGTGTGAGGAGTACTATGGGCTGCGCTTGGATGTTCATGAGACAGTCATGTCCCATCTGCAGACACTGAAGGCTTTGTGTCCAGGCCGAGTGATAGTTACTGATGTTTACTTGCAGGAGACAGTCATGTCCCATCCGCAGACACTGAAGGCCTTGTGTCCAGGCCGAGTGATAGTTACTGATGTTTACTTGCAGGAGACAGTCATGTCCCATCTGCAGACACTGAAGGCTTTGTGTCCAGGCCGAGTGATAGTTACTGATGTTTACTTGCAGGAGACAGTCATGTCCCATCCGCAGACACTGAAGGCCTTGTGTCCAGGCCGAGTGATAGTTACTGATGTTTACTTGCAGAAGACAGTCATGTCCCATCCGCAGACACTGAAGGCCTTGTGTCCAGGCCGAGTGATAGTCACTGATGTTTACTTGCAGAAGACAGTCATGTCCCATCCGCAGACACTGAAGGCCTTGTGTCCAGGCCGAGTGATAGTCACTGATGTTTACTTGCAGGAGACAGTCATGTCCCATCCGCAGACACTGAAGGCCTTGTGTCCAGGCCGAGTGATAGTCACTGATGTTTACTTGCAGAAGACAGTCATGTCCCATCCGCAGACACTGAAGGCCTTGTGTCCAGGCCGAGTGATAGTCACTGATGTTTACTTGCAGAAGACAGTCATGTCCCATCCGCAGACACTGAAGGCCTTGTGTCCAGGCCGAGTGATTGTCACAGACACACCTGAGCACCACAACGTCCTTGGTGTGGTCCTGGCTAGTGGACGTGACAGGACGTACACTGTCCTGATTGTGTGTGGACAGGACGAATCCACTGAGAAGGACATTGACCAGTGTGACCTGTCAACGCCGCGGCCGCTGGTGGCCAATCAGCTATATCTTCCTGAAGGACTATGTGGTCATCGAGTGGTCATTCTCAAGACACAGATCAGTAGTGTGACGACGTCCACAATCAAGGTGAACGGCGATAAGATTATCAATGATTATAAGAAACGGCAGCAGCCAAGATTCAGAGATGACCCCCCTGGTCAGTCAGCCAGCGTTGCCACCCAGGAGCTGGTCAGACTGATAGAGTCACATCCGGATGGACTGCCAGAGCTGGATCCAATGCGGGACCTGCACATCCAGAATATGGATCTGGTGGAACAGTTCCAGAGGATCAACTTCCTTAAGTCTTCATTGCTTAGCAGCTATAAGTGTGTTGATGATCCAAACTTCATGGAGCACTTTGACAAGGTGCGCCATCGGAAACAGCTGCTGCAGCAACAGAAGAAACTCATCTTCCTCCTCTCTGATGCCAGTCTCCAACTACTACCAGAATTCCAACTCAGGGTCAAGGTTCTACGGGAGTTGAATTACGTTGACGCGGCAGGAACGGTGCAGCTGAAGGGGAGGGTGGCATGTGAGATCAGTGGCCATGAACTCATCATTACAGAACTCATCTTTCACAACATGCTTACCCCTCTCCACCCTACGGAGATCGCCTCCGTTCTGTCTAGCGTTGTCTTCCAGGGGCGCCGACAAAACAAGGACAAGGAGAACTCCAGTCTCGCCGACGTGAAGGAGAAGTTTTTGGAGATAGCAACAAAGATTGGCGAATTACAACACAGCAGTGGCCTTGACATTCAGGTGGAGGACTACGTGGACGAGTTCAACTTTGACCTCATGGACGTTGTCTTTGAGTGGGCTCGGGGCGTCAAGAGCTTTGCTGAGATCATGCAGATGACCAGCGTCCAGGAAGGAATCATTGTGCGGTGTATCCAGAGACTGCACGAGACACTGAGAGACGTCCGTAACGCAGCTCGCATCATTGGCGACCCAATCCTTTACCAGAAGGCAGAGGAGGCTTCAATGCTCATCAAACGGGACATTGTCTTTGCTGCTAGTCTCTATGTCCAGTGAGCACGTCTTTATGTCCAGTGAATACGTCTCTATGTCCAATAATCTCATCTCTATGTCCACTGAACACATTTCTATGTCCAGTGAACACATCTCTACGTCCAGCCATTTCTGCCCTGAACATAATAAAAAATATTCCACTACAGCAGATGTCTTCTTGATGATGTTATGATGATAACTTCTTTGGAGTTTGCGTACAAATATTGAGGATAATTGTGCTGTACTAATCTGTGGCCAGTAAAATTCTGTGCCACCAGAGAAATGTTTTCTTTTAAGAAAGCCAGTGTTATTGGTGAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF08148	DSHCT	DSHCT (NUC185) domain	Domain	Interproscan
PF13234	MTR4_beta-barrel	Mtr4-like, beta-barrel domain	Domain	Interproscan
PF17911	Ski2_N	Ski2 N-terminal region	Domain	Interproscan
PF21408	MTR4-like_stalk	Exosome RNA helicase MTR4-like, stalk	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR012961	Domain	ATP-dependent RNA helicase Ski2/MTR4, C-terminal	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR016438	Family	ATP-dependent RNA helicase SKI2-like	Interproscan
IPR025696	Domain	Exosome RNA helicase MTR4-like, beta-barrel domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR040801	Domain	Ski2, N-terminal domain	Interproscan
IPR048392	Domain	Exosome RNA helicase MTR4-like, stalk	Interproscan
IPR050699	Family	RNA/DNA Helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12131	ATP-DEPENDENT RNA AND DNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006401	Biological Process	RNA catabolic process	Interproscan
GO:0055087	Cellular Component	Ski complex	Interproscan
GO:0070478	Biological Process	nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-