Gene detail

Detailed information of Lsat_s017.g0129.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s017.g0129.t1	DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER	Lsat_scaffold017	2878717	2904225	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s017.g0129.t1

ATCGCCACCTGTTGTGTAAATATGTACCATAAAGTGATGCAGTTGCGTCCTCTGGTGATCATACTATGTTTTACCATGCGACAACTGGATAAAAGCTATTTATACAAGAGCGTCGTTTTGCAGCGACCTTCAATCTTTAATTACTTTCATTGTCGCGAGAGATGACGTACATCTTGGAACGGCTGTATCTGGGAAGCATGGAAGATGCTTCCAACTCGGCGCAGCTCAGGAAGAAAGGGGTCACCCACATCTTGACAGTCGACTGGAAACCAATATCACGGGAATGGCGGGAGAGCTTTGAGTACCAGTATATTTCTGCGATGGACGAGCAGGAAATGGATTTATTGTCACGTTTCGAAGAATGCATCCAGTTTATAGCAGACGGACGGAAGATAGGAGGAGTGCTGGTTCACTGTCAGGCTGGACTGTCCCGCAGCGCCACTGTCGTTATAGCCTACATCATGAAGACTATGAGTTTGAGTTTCACCGAAGCCTTTAGTCTCGTTTCCAGACAACGACCTCAGATCATGCCAAATGACGGGTTTGTGGAGCAGCTACGACTATTTGAGTTGATGGGAAACCAGGTGGACCCAACAAGTGAATTCTGCCGAAGATATCGACTGCAGCGACTCGCGGCCATGATGCAAAGAACTCAGGATCCTAACAGAACTACTTTCCAGAAAGATGCGTTGTCAGCTGACCCTGCAGGGTCAAGTGAAAGTGAGGCTGGGGTCATGTACAAATGTAGGAAATGCAGGCGTCCACTATTTCGGGAAGGGGTGATAATGTGTCACCCCGTCGGCCGGGGACGAGAGGCTTTCCACTGGAAGGGCAGCACTATTAGGCACAGCTACGACGATGAGTCCTCAGAGTTAGCAGCCTGCACGGGAACGTTGTTTACTGAGCCCATCCAGTGGATGGAAAAGTCCATTCTCTCTGTTGAGGGGAAGTTGTCCTGTCCAAAGTGCCAGGCAAAATTAGGGTCCTTCAACTGGGCAGGTGAGAGATGTCCGTGCGGCCGATGGATAACACCCAGCTTCCACATACTCAGTGGCAAGGTGGATAAATGCTTCCCCCGTGCCATGCCCCCAACCCTGCAGCCGAGGGCAGGGACAGCCAGACGTGAGAAAGACAGAGATAGTGCACGGGAAAAGAGGGATGTGGACATGACAACTGTATTAGATGTCACAGGACAGTCGAGCAGTGGCACGTAGCACCGAGTGTCAATTAACAAAACATGTATTTGTGTTATGCTGTGCACGAGTCAGGTGTAAGATGTAATATTTAACACTATTTGTTGTGGCTATGAATTGCCGCTTGTTGAAATTAAAATGAGTATATTTATAATTATTATTTTTATGGAATTCTATTTTGGGATAACCTCTGCCATGGAACACGGGTATGTATGTTATAATAGCCACCAAAGGGCAAGATGTGAGTACCTTACTTCCTTGAAGACAAGAGCATCAGGTTTCCTAATGTGGTTGATAAGGTACAATATAGTCAGACTGCATTACTGCTGACGTCAATTAAAACCAAAATAGGAAATATTGTATCTTAATCACACTTTATTCAAGCTATTTTGCTCATGCATAAAAGGAAGTGTTGTGATTTACAACACATCCTTGCTTTTCTGTCTCCCACACACGGTTTCTGCTAGACCTTGTATTTTCACCTATTAACTAAAATTGCAACCTTCGTAAGTGTACTGGAATAAATGGTATGTGGGATAATGTTAGACAAGAGCCTGATTAAATGCGACTTCTACAGCAACCCAATTCATCCTAAAGAGCAATGCATGTGCTGGCCTTAACAACATACAGTTGTATATATGATACCAAGCCTTAACAACATACAGTTGTATATATGATACTAAGCTGCAATGCGAGCCACATTAACAGAATGCAGCATGTAAACCAGTTACACTGCAGTAACAACTCAGGAGTCTGCACTGTCCCGTGTCTGTCCAACAAGCAGGCACCATGCTGCATGCAGTTCACTGGCTATATATATTATCCTGTTGCTAATGAAGATGTCTGACTTGCCCAAGTTATCATCAGTGACCTCCACAGGCACAGCAAACCGACAAACAGTGCAGGCACGTGTGGCAGTGATTGCATGCAGGTTCTAGAATGAGATTATTTTCACAAAAAAGAAAATAATGTCTGCCATTTACGCAATTATCACATGATCACTGGCATCACAATTACCCTAAAAACACAACCAAGTGTATCGACGCCTCCTTAGTACATGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00782	DSPc	Dual specificity phosphatase, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000340	Domain	Dual specificity phosphatase, catalytic domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR016278	Family	Dual specificity protein phosphatase 12	Interproscan
IPR020422	Domain	Dual specificity protein phosphatase domain	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45848	DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0008138	Molecular Function	protein tyrosine/serine/threonine phosphatase activity	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-