Gene detail

Detailed information of Lsat_s017.g0060.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s017.g0060.t1	RIBOSOMAL PROTEIN S6 KINASE	Lsat_scaffold017	1409856	1425640	+

Gene Structure

More details in Jbrowse Sequence

CDS

Lsat_s017.g0060.t1

ATGTCAACCAAAAAGAAGTTGTATGACAGTTCTGTTAGATGTTACGAAGTATCTGATCCCACGTTGCATCCGAAAGGGCATACCATCTACAAAATAACACAGAGGACAATACAAGCTGAAGCACTAGATGCCAATGTTCAGGAGGTGGTTGTGTGGAGGCGATATAATGACATTAAGAGACTCTACAAAGCTCTGTTTCATCTACACCATACGCTACACAGGAAGGAGGAATTTCCTCCATTCTCCAGATCAAAAGTCTTTGGTCGCTTTGACCAAACGGTGATCATTGATAGGATGCGCAGTTGTCAAGACCTACTCAACTTTGTTGGCCAGCGAACATACCTGGTGAACAGTCAGGCTTTTCAGCAGTTCTTTGAGGGAGGTGAGAAACTTGAAACAGACATCAGCAAGTGTGAACTTCTGAAACCTACCACTAGGTGTCAGCACGAGGGAGACAGTTGGGCGACAGACAGCACCAACAGTGTGTCATTGTCGGATGCATCTGAAGATGACGCTGGTTTCTTAAGAGGCAGTTCAGCTGAGGTCACTGCATCATCCAGTGGAGACCAGTTGGGAGACTCTCTGGGCGGAGTCTGGCAGTATCGGCAGTCTGCTGATGAAATCAGTCTCCATGACGATGACGACGATTTGAGCTTCCTTGATGACATTGACAGCACACCTGCACAGACGGACATCACTGATATCATGGATGATTCTCCATGTGACGTGGCGCTACAAAAGACAGACATTGATTTGTTCGACCCGCTGGCGGGGAGGAACATGAGCGAAGATGACAATCAATGTAGCAATGAATGGTTGCTATCGGCAACTCCAGTTTGTGACAACAACAAAGGGTTGCCACGGGAGATGGACGATGATAACACTAACGCACTCCTGCAAGAGTTAGAGAAGGAGTTGGTGTCGTCGTGTGGTGACGCAAACAGAGACAGAAGTGACACGTCAACTGGTGTCAGTGAAATAGGTGTAACACCTGGTCCCGGTTCAACAGACGCAGGTTATGTGGACTTATCAAGTGGCGGCAGCAACACTGACATTAGTTCCGACGCAACCCCAAAGGACCGCTCAAGAAGCAGTTCGACCGTAGAATGCGGGAAGGGAGACTTAGTCATAAGCCCTGTCCACCCTGCTCCCTCCGCACTTTCATTCCTCCCGTCAGGTGGCCCTGGGGCAAAATCCGCCAGTCCGACACACTCAGCCTCAATGCAGCAGACAAAGAGGTCGGAGGTCGGCAGCGTGACATGTTCACCCCGACACCAGGGTGGTCTTGTGACGGTCGACTTAAAGCAGAAAGCAGACTACATCTTCCAGGCGGCGCATCACATCAGTCTCGCCCAGCAGTGTGAGGCCAGCGGCAACTACTTCATGGCGTTCAACTACTTCAAGAGTGGCGTGGGCATTCTACTGACCGGCGTCCAGTTGGATGAGAATGAGAAGAGACGAGACATCGTGAGGAAGAAGACAGCCAAGTACCTAATGAAAGCAGAGTCACTGCACACCAAATACCTGTCTGGGGGAGAGAGCACAGATCACTGGGACACTCGACTGGTATCAACAGAGAAGTCTCTTCAGCCCGACGTTGCATTCCTGTGTGGCCCAGTCAGTGAGCTGGCCAACTACCGTGTGTTGGGAGTTATTGATAAAGTCCAGCTTGTGATGGACAAAGTTACAGAAACCACATACGTTATCAAGGTGCTGTACAAGAGCTGCAAGGAACCTGTGGGGCAAGCGATTGTGCCGACTATCTGCCCATTTATGGTGCGACTGTATCGTTACTATGAGACCAGCAGCGCCATCTACCTGCTACTCCAACATGCCACCGGGGGCCACCTGTGGAGCTACGTCAGCGGTTACTTGAATCAAACTCCGCAGTCACCTCAGTTTGACGATAACCATGGCAACAGGCAGTCACCTACCCAAGTTGGCGAGGAAATAACGAATGTCAAAACTGAAACGAGTAATGAAGATGCGCGTGTGCCACAGGAATGTGCCGAAAGCTATAAGAAATTATTCACCGAAAACAGCATGCCGTTGTCGGAAATTGACAATGGAAATTCCAATGCTGCACCTGCGAGAAGTCAGTATAGGAAGAGCATTGATTCGTTGGGACTGGACAAAAGTCCAGATATCTTGGTGTTGGGAAATACCCAGCATCCCCTAGTCAGACGTGTATCATCAGGGAAGGACGGAACAGGATTTGGGGAGCTACTGAAGGGATCGGACGTCCCGGTGGAACAGTTCAGCATCAACAGTTTCGACAGTGATGTGACACCAGGGGGCGCTAGATACAACAGCAGCACGACCGATTATATCGAGACAGTCCCCGAACTGAGCGAGTCTGTTTCGCCGACAATGTCTCCGAGCAAACATGCGACATCACCGGCAGACGAAGATGTCTTTATTGAAAGGAGTCTGGATAACCATTTGACTGAGATTCGCAATGGTGAATGTTTGAGAAGTACACCTGCAGGTGGTGCTCATGATGATGCGATTGTCTCACCGCAGCATCGACGTGGTCAAGTGTCGATGGATAAAATCGTTGATGGACAAAATACTGTGGAATCGGATAATGAACCAAGTATATATGATCGTCCACAAAGCACAAACTGTGATACGGATAGTTTAGATGAGTCAAACATGTATTCCGACTCACGGACTGAGGCCGGAGAGAACAACAACCATAAATCTGACAATATCAGGTGTACGCAATCCCCTGACACTGTTACGGAATCAAAAACATCACCAGATACGCACGTAACTTCAACAGACAAGCCGGAACACCGGCAGGTGTTCCGAATGCCATCGCAAGAACGCAGCCTAGAAACGCGCCCTACTGGACCCGTTCGGAAGCGATCGCGGACCGGGCGAGTGCGTACGCTGTCGTCGGTGTTCGGAGACCTGGACTTGGCTGACGACAATGGGAGGGTGGAGTCGCCATCGTTGGCACGACTGCCGGAGACTTGTGTGCGACAGTGGATAGTGGAGATGTTGGTCGCTGTCACCAGACTGCATCAGCTCGGCATTGTGTGCAGAGACCTGCGACCAGCGAACGTCCTGCTGGGAGAACGAGGTCACGTGATCCTCAGCTACTTCAGTCGGTGGTCGTGCGTGGACGCAGAGACACTAGATGTGCTAGCTGTCAGTCAGCTGTATGCCGCTCCTGAGGTGAGTCAGCTGTCGCAGGAAGTGAGTGACGCGTCTGACTGGTGGAGTGTTGGCGCGCTGATGTACGAACTTCTCACTGGAAGAAGCCTGGCCAGCTGTCATCCCAGTGGGATCAACTCCCACACCTGTCTTATGATCCCTGACCACGTCTCCCCCGAAGCCCAGTCCCTGCTACAACAGCTGCTGAAGTTCAGCCCGTCGGAGCGACTGGGTTCTGGAGAAGGAGGCGTGGAAGACATCAGGGCACATCCCTTCTTCGCGGACGTTCACTGGCCCTCCATCAGCTGA

Transcript

Lsat_s017.g0060.t1

CGTAACATAAATTGTTGAAAACCAGAAGGTCAAGGCTAAACAAGATGTCAACCAAAAAGAAGTTGTATGACAGTTCTGTTAGATGTTACGAAGTATCTGATCCCACGTTGCATCCGAAAGGGCATACCATCTACAAAATAACACAGAGGACAATACAAGCTGAAGCACTAGATGCCAATGTTCAGGAGGTGGTTGTGTGGAGGCGATATAATGACATTAAGAGACTCTACAAAGCTCTGTTTCATCTACACCATACGCTACACAGGAAGGAGGAATTTCCTCCATTCTCCAGATCAAAAGTCTTTGGTCGCTTTGACCAAACGGTGATCATTGATAGGATGCGCAGTTGTCAAGACCTACTCAACTTTGTTGGCCAGCGAACATACCTGGTGAACAGTCAGGCTTTTCAGCAGTTCTTTGAGGGAGGTGAGAAACTTGAAACAGACATCAGCAAGTGTGAACTTCTGAAACCTACCACTAGGTGTCAGCACGAGGGAGACAGTTGGGCGACAGACAGCACCAACAGTGTGTCATTGTCGGATGCATCTGAAGATGACGCTGGTTTCTTAAGAGGCAGTTCAGCTGAGGTCACTGCATCATCCAGTGGAGACCAGTTGGGAGACTCTCTGGGCGGAGTCTGGCAGTATCGGCAGTCTGCTGATGAAATCAGTCTCCATGACGATGACGACGATTTGAGCTTCCTTGATGACATTGACAGCACACCTGCACAGACGGACATCACTGATATCATGGATGATTCTCCATGTGACGTGGCGCTACAAAAGACAGACATTGATTTGTTCGACCCGCTGGCGGGGAGGAACATGAGCGAAGATGACAATCAATGTAGCAATGAATGGTTGCTATCGGCAACTCCAGTTTGTGACAACAACAAAGGGTTGCCACGGGAGATGGACGATGATAACACTAACGCACTCCTGCAAGAGTTAGAGAAGGAGTTGGTGTCGTCGTGTGGTGACGCAAACAGAGACAGAAGTGACACGTCAACTGGTGTCAGTGAAATAGGTGTAACACCTGGTCCCGGTTCAACAGACGCAGGTTATGTGGACTTATCAAGTGGCGGCAGCAACACTGACATTAGTTCCGACGCAACCCCAAAGGACCGCTCAAGAAGCAGTTCGACCGTAGAATGCGGGAAGGGAGACTTAGTCATAAGCCCTGTCCACCCTGCTCCCTCCGCACTTTCATTCCTCCCGTCAGGTGGCCCTGGGGCAAAATCCGCCAGTCCGACACACTCAGCCTCAATGCAGCAGACAAAGAGGTCGGAGGTCGGCAGCGTGACATGTTCACCCCGACACCAGGGTGGTCTTGTGACGGTCGACTTAAAGCAGAAAGCAGACTACATCTTCCAGGCGGCGCATCACATCAGTCTCGCCCAGCAGTGTGAGGCCAGCGGCAACTACTTCATGGCGTTCAACTACTTCAAGAGTGGCGTGGGCATTCTACTGACCGGCGTCCAGTTGGATGAGAATGAGAAGAGACGAGACATCGTGAGGAAGAAGACAGCCAAGTACCTAATGAAAGCAGAGTCACTGCACACCAAATACCTGTCTGGGGGAGAGAGCACAGATCACTGGGACACTCGACTGGTATCAACAGAGAAGTCTCTTCAGCCCGACGTTGCATTCCTGTGTGGCCCAGTCAGTGAGCTGGCCAACTACCGTGTGTTGGGAGTTATTGATAAAGTCCAGCTTGTGATGGACAAAGTTACAGAAACCACATACGTTATCAAGGTGCTGTACAAGAGCTGCAAGGAACCTGTGGGGCAAGCGATTGTGCCGACTATCTGCCCATTTATGGTGCGACTGTATCGTTACTATGAGACCAGCAGCGCCATCTACCTGCTACTCCAACATGCCACCGGGGGCCACCTGTGGAGCTACGTCAGCGGTTACTTGAATCAAACTCCGCAGTCACCTCAGTTTGACGATAACCATGGCAACAGGCAGTCACCTACCCAAGTTGGCGAGGAAATAACGAATGTCAAAACTGAAACGAGTAATGAAGATGCGCGTGTGCCACAGGAATGTGCCGAAAGCTATAAGAAATTATTCACCGAAAACAGCATGCCGTTGTCGGAAATTGACAATGGAAATTCCAATGCTGCACCTGCGAGAAGTCAGTATAGGAAGAGCATTGATTCGTTGGGACTGGACAAAAGTCCAGATATCTTGGTGTTGGGAAATACCCAGCATCCCCTAGTCAGACGTGTATCATCAGGGAAGGACGGAACAGGATTTGGGGAGCTACTGAAGGGATCGGACGTCCCGGTGGAACAGTTCAGCATCAACAGTTTCGACAGTGATGTGACACCAGGGGGCGCTAGATACAACAGCAGCACGACCGATTATATCGAGACAGTCCCCGAACTGAGCGAGTCTGTTTCGCCGACAATGTCTCCGAGCAAACATGCGACATCACCGGCAGACGAAGATGTCTTTATTGAAAGGAGTCTGGATAACCATTTGACTGAGATTCGCAATGGTGAATGTTTGAGAAGTACACCTGCAGGTGGTGCTCATGATGATGCGATTGTCTCACCGCAGCATCGACGTGGTCAAGTGTCGATGGATAAAATCGTTGATGGACAAAATACTGTGGAATCGGATAATGAACCAAGTATATATGATCGTCCACAAAGCACAAACTGTGATACGGATAGTTTAGATGAGTCAAACATGTATTCCGACTCACGGACTGAGGCCGGAGAGAACAACAACCATAAATCTGACAATATCAGGTGTACGCAATCCCCTGACACTGTTACGGAATCAAAAACATCACCAGATACGCACGTAACTTCAACAGACAAGCCGGAACACCGGCAGGTGTTCCGAATGCCATCGCAAGAACGCAGCCTAGAAACGCGCCCTACTGGACCCGTTCGGAAGCGATCGCGGACCGGGCGAGTGCGTACGCTGTCGTCGGTGTTCGGAGACCTGGACTTGGCTGACGACAATGGGAGGGTGGAGTCGCCATCGTTGGCACGACTGCCGGAGACTTGTGTGCGACAGTGGATAGTGGAGATGTTGGTCGCTGTCACCAGACTGCATCAGCTCGGCATTGTGTGCAGAGACCTGCGACCAGCGAACGTCCTGCTGGGAGAACGAGGTCACGTGATCCTCAGCTACTTCAGTCGGTGGTCGTGCGTGGACGCAGAGACACTAGATGTGCTAGCTGTCAGTCAGCTGTATGCCGCTCCTGAGGTGAGTCAGCTGTCGCAGGAAGTGAGTGACGCGTCTGACTGGTGGAGTGTTGGCGCGCTGATGTACGAACTTCTCACTGGAAGAAGCCTGGCCAGCTGTCATCCCAGTGGGATCAACTCCCACACCTGTCTTATGATCCCTGACCACGTCTCCCCCGAAGCCCAGTCCCTGCTACAACAGCTGCTGAAGTTCAGCCCGTCGGAGCGACTGGGTTCTGGAGAAGGAGGCGTGGAAGACATCAGGGCACATCCCTTCTTCGCGGACGTTCACTGGCCCTCCATCAGCTGATTCCTCACAGATCATTCCATTGAAATAATACACTTAAACTAATTATAAATGCTTTTTTAGCATCCACAAAGTCCTCATTTCAGTATCATTCCAGGTCATGTCCCTACTTAATGGGCATGTACCGGTACATACAAACATTGTATACTATTTAGAATGTGTCCAGATCATAACAGAATTAAACAAATTATTCATAAACTTTTGTGTACATTTTACAGTAAATGACAAACAGATGGACGAATTATAAACTGGCTACACCTAGGTAGTCAGCAGACTGGACTTATGGCTACCCCTAGGTAGTCAGCAGACTGGGTAGTCAGCAGACTGGACTTATGGCTACCCCTAGGTAGTCAGCAGACTGGCCTTATGGCTACCCCTAGGTAGTCAGCAGACTGGACTTATGGCTACAACTAGGTAGTCAGCAGAATGGCCTTATGGCTACCCCTAGGTAGTCAGCAGACTGGATTTATGGCTACACCTAGGTAGTCAGCAGACTGGACTTATGGCTACACCTAGGTAGTCAGCAGACTGGACTTATGGCTACACCTGGGTAGTCAGCAGACTGGACTTATGGCTACCCCTGGGTAGTCAGCAGACTGGACTTATGGCTACCCCTGGGTAGTCAGGAGACTGGACTTATGGCTACCCCTAGGTAGCCAGTAGACTGGACTTATGGCTACCCCTAGGTAGTCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF00787	PX	PX domain	Domain	Interproscan
PF04212	MIT	MIT (microtubule interacting and transport) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR001683	Domain	Phox homology	Interproscan
IPR007330	Domain	MIT domain	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR036181	Homologous_superfamily	MIT domain superfamily	Interproscan
IPR036871	Homologous_superfamily	PX domain superfamily	Interproscan
IPR051866	Family	Intracellular Signaling and Trafficking Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15508	RIBOSOMAL PROTEIN S6 KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0035091	Molecular Function	phosphatidylinositol binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-