Detailed information of Lsat_s016.g0344.t1 in Lamellibrachia satsuma Gene info
Gene IDAnnotationScaffoldStartEndStrand
Lsat_s016.g0344.t1TRANSCRIPTION ELONGATION FACTOR SPT6Lsat_scaffold01688062368841620+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00575S1S1 RNA binding domainDomainInterproscan
PF14632SPT6_acidicAcidic N-terminal SPT6FamilyInterproscan
PF14633SH2_2SH2 domainDomainInterproscan
PF14635HHH_7Helix-hairpin-helix motif DomainInterproscan
PF14639YqgFHolliday-junction resolvase-like of SPT6 DomainInterproscan
PF14641HTH_44Helix-turn-helix DNA-binding domain of SPT6DomainInterproscan
PF17674HHH_9HHH domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR003029DomainS1 domainInterproscan
IPR006641DomainYqgF/RNase H-like domainInterproscan
IPR010994Homologous_superfamilyRuvA domain 2-likeInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR017072FamilyTranscription elongation factor Spt6Interproscan
IPR023319Homologous_superfamilyTex-like protein, HTH domain superfamilyInterproscan
IPR023323Homologous_superfamilyTex-like domain superfamilyInterproscan
IPR028083DomainSpt6 acidic, N-terminal domainInterproscan
IPR028088DomainHelix-turn-helix DNA-binding domain of Spt6Interproscan
IPR028231DomainTranscription elongation factor Spt6, YqgF domainInterproscan
IPR032706DomainTranscription elongation factor Spt6, helix-hairpin-helix motifInterproscan
IPR035018DomainSpt6, SH2 domain, C terminusInterproscan
IPR035019DomainSpt6, SH2 domain, N terminusInterproscan
IPR035420DomainSpt6, SH2 domainInterproscan
IPR036860Homologous_superfamilySH2 domain superfamilyInterproscan
IPR037027Homologous_superfamilyYqgF/RNase H-like domain superfamilyInterproscan
IPR041692DomainHHH domain 9Interproscan
IPR042066Homologous_superfamilySpt6, Death-like domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR10145TRANSCRIPTION ELONGATION FACTOR SPT6Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006139Biological Processnucleobase-containing compound metabolic processInterproscan
GO:0006368Biological Processtranscription elongation by RNA polymerase IIInterproscan
GO:0008023Cellular Componenttranscription elongation factor complexInterproscan
GO:0031491Molecular Functionnucleosome bindingInterproscan
GO:0034728Biological Processnucleosome organizationInterproscan
GO:0042393Molecular Functionhistone bindingInterproscan
GO:0140673Biological Processtranscription elongation-coupled chromatin remodelingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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