Gene detail

Detailed information of Lsat_s016.g0245.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s016.g0245.t1	MYB-BINDING PROTEIN 1A FAMILY MEMBER	Lsat_scaffold016	6341617	6385835	-

Gene Structure

More details in Jbrowse Sequence

CDS

Lsat_s016.g0245.t1

ATGGACAACATATCCGCGTTGTCTGAAGGCGATGAAGAGAGACGCATAGTTGCTGCAACTGATATTGTCAAGTTGCTGTTAAGTAAACAAAACGAGTCAAAATCTGTATGCAAAGAATTGGAATATACTTTAACTCGACTGGTGCGTGGCCTGGCGTCCAACAAGAGATGGGCAAGACTGGGTTTCTCCCTTGCTCTGGTGCAGGTATTGAGGCACTTTCCCGTTGTCTCTGTGAAAGACATTCTGCAGACAGCAAAGAAGGTGCTTGCGATTCAGAAGAACGACTCCAAAGGGGAGCAGAGTAACGTGAGACTGGGTCAGGTGATGGTCTATCTAGCGCTTACCCAGTCAGACCTTATACAGAAGGCTGGTGACACAGAGCTGGCAGCAGTGACCAAGTCACTACTGTCGGTGAGAAAAGAGAAAGCCCCTCTACATCTGGTGTGTACACAGACAATCTGTGGCATCATCACGAAGGTGTCGCAGTCACAGTTCACCGAGCACGTATGGCCTGCCCTGGAAAGTGACCTCAGTACTGGATGGGAGAAGTGTTCGCCCGACAAAATCTTGATGCTCCTTACTGCCACCAGATGGCACCCGATGACGGTGGACAAGGCGTTTCTGAAGAGTCATTGGGGTTGTAAACGACTAGTCAATGTGAATACCTGTAAACACATTGCACAGGTTTATCTGCAATCAACAGTCAACCACCCAGTCATCCATCCTGTGTGTGTTGAACTCCTCACAGATGCCTTCCAGCAGTCGAACGTCTTCCCGACATTTTGGAAGGAAGTTATAGATGACTCGCTCCTGCAGCAGCGAACATCAAAAAAGTACCTGTGTCTCCACCTGGTGCCATATGCCCTCAAGCTCAGCAAATCTGTGTTACAGGTGTCTGTGATTCTTTCAACAAATCTTGTTGCGTGCATCATGGGGTTCCTAGCCAATCGAGAGCACGCGCTCCATGATGCTGCGGAACACTTGGTCCAGCAACTGACCTCGTATGTGTCATCTGCTGAAGTGACAGCTGAGGTTAAGGTTGCCGTGGTGAATGCTCTACTGAGCATGCCCAGTGGGGCCGTAATGGACCAGTCTAAATCTAAGTTGTTTTCCAACTTGATTACTAGGTTGGACCACGAAGCGGCGGACATGTTGTCTTGTGTGCTTATGAAACTGGTGCGAGGGGAGACAGACAGTGAGGAGATTACCCCGCTCACAAACCTTCCCACTCGGTGGGTCATACAACAACTATGTGCTATGACAACGATGGTCTCCATGGCGACAGACAACGTGTGGCAACTGAAGATTCTGCAGTTTCTGTTCTTGAATTCGTTCTTTAAAGTGGTTGAACCGACCGAAGACATCCCACACTGTGATAGGCCAAGTGTACCACCTCTGACAGATGCTCTCAGACACACTGTGCTCGATGGCTTCTTCAAAGTCCTCAGTAAACTGGCCACATTCAACACAGATAAAGGCATTGCCAAGGACCACACTTGTTACATTGAAGTGCTGCACGGTCTCGTCAAATACGCACAGACCCTACTGGACAACCCACAGGTGGCAGCACCAGTTAAGGACTTCAACGAGGAGACTCGAGAACAGTGGTACAAAGTTGTACAGGTGCTGTCCAAGATTAAGGCCAAGCAAGATAAAGAGAAGCGGATGAACGAAGGACGCGCCTTCCAGTTACTTTATCTCCATCTCGGTCTACAGCTGTTTACACACCAGAGGGAGACACTTGATGTGTTGAAGGATCTTCATGGGTGCTACGAACGAGCTTTTCGCAAGAGACGAATGTCAATCAAGAAGCTAGACTTGACGGAACCTGAATGGGTTGAGGTGATCACCGAACTGCTCCTGAGCATGCTGTCCGAGCAGAGCCACCTAGTGAGAGTTGTTGTCAACACCGTGTTCCGAATGCTGTGTCCACACATGACAACGGCCGCTCTGCAGTTGATACTTGACGTGTTCACCACAGACACCGAGGATGATGGACCACTAGACTTTGAGGACGAAGAAGACGAAGGCAGCGACTCCCAGGAAGGGGAAGGGGAAGCGGAAGGGAAGAGGAAAGTCAGGAAGGAAGAGGAAGATGAATCGAGCGACTCTGACAGTGACAGTCTGGAAGAGGTGGAGGAAGAAGTCGACGAGGAGTTGAGGTCAAAGGTCAAAGCTGCTCTCGGAAAGGGTGCCGTGTGTAACCATGAGGAAGAAGAAGACGACGACTTGAGCGACAGTGAAATGGCGAAGTACGATGACGCTCTGGCAGCCATCTTCAAAAAGAAGGGACAGGGAAAGAAAGAGCAGAAGGAGCGGGAGGTGCAACTGAAGCACTTCAAAATGAGATGTCTCGACTTGTTGATAACCCTCGTCCAGAGTCATCCGCAGCCCAGTTTGCTTCTGCACCTACTGCGCCCCCTGTTGGAGCTGGCAGAAAATGCGCTCAAGGACAAGACAATGAAAGATCTTGGAAACAAGACAATCAATGTCCTGCATCACTTATGTCATCCAAGGAAGCTTCCACCGGACACAAACATTGATAAGTGTGAGTTGCCAGAAATGTTCAAGGAACTTCTTTACTTCTCGGCTAAAGTGTCAAGTTTTCCTCTCATCAATGAAGTGGCCAGTGCTTGTCTGTTTCTGGTGAGAGTGATGCTGGGCCTGGAGAGTAACGCTGGGCCATCCCCCATGCGCACCAGGGCAATGAAGGTCAAGAAAGACCAGTCGAAGCCAAAACAAGACAAGGACATTGACAATCTCACGCGAATCCACATGGTTCTGAAGGATGCCATTCAAGAGTACTGCGAGAAAAGAGACACTAACCTGGACCACAGACTGTTTCTTTGTGTCCTTGAGCGACAAGCTGCTCTGCTGTGGCCTGTCACCGACTCCCTGCTGGGATACGTCAGGAACACAGACATACGACTATTCTGTAGGACACAGGTGTGTGCCATGTTGGCTGTCATGATCAGCAAACAATCTGTGCAGTCATTGGGCATGGAAAACTGGCAGCAGTTTGCGAAAGAGCTGATGAGAGAACTTTATCAGGTTCTACAGCAGTTTGGTGAAGACAACGTGAAGCCAAGGATCATGCGTCATATTCTCTTTGTCATGTACCGCACTTTAACCTCTTCCTCTCAGGACACTATCAAGGATCTTGTGTCTGAAGATCTCGTTCGCAGTGTGCAGAAGGTCAAGGTCATGGTGAACAAGGTCAAGGACACAAGGATTATGTGCAACAAGTTGCTTGGTTTCCTTGCAAGCAGAGTCTCAGTTCCAGTTGATGGCAGTGAGAAGACAAAGAAAAATAAGAAAGAAAAAAGGCAGGAGGAGAATGGAGAAGAGTTTGTGACACCGAAGAAGAAAGCCAAATCTTCTCCTGTGAGCCCATCCGCGTCCATTGGCAGCTTGTCGTCATCAAAGAGGAAGAGGGAGAGGCAGAACTCGACAAACGGGACAGAATTACAACCGGAACAAAACGGTAACCTGGCAAATGGAACTGCAGAAGAAACCACGATTGCTGCAAAGTCCCCCGTCACAAATGTTGACGCTCAATCGCATAAAAAGACAAGTGCGAAGAAAAGGAGAAAGTCAAATGCAGGTGACAATTCGCTGGCAATGTCCAGTGAACATTTGAATGAGTCGACGGTAAAAGAAGCAGACTCTTCTCTGCATGAACTTACTAAGAAACGGCGGTCACTTGCCACCCTGGTGGGAGAACCTGACACTCCAGGTTCAAGCCAAAAACGGAAGAAAAACAAGACGAATTCTGCTGCTTGA

Transcript

Lsat_s016.g0245.t1

CATAAATATGTCAGGGAGGAACGCCTTATGGACAACATATCCGCGTTGTCTGAAGGCGATGAAGAGAGACGCATAGTTGCTGCAACTGATATTGTCAAGTTGCTGTTAAGTAAACAAAACGAGTCAAAATCTGTATGCAAAGAATTGGAATATACTTTAACTCGACTGGTGCGTGGCCTGGCGTCCAACAAGAGATGGGCAAGACTGGGTTTCTCCCTTGCTCTGGTGCAGGTATTGAGGCACTTTCCCGTTGTCTCTGTGAAAGACATTCTGCAGACAGCAAAGAAGGTGCTTGCGATTCAGAAGAACGACTCCAAAGGGGAGCAGAGTAACGTGAGACTGGGTCAGGTGATGGTCTATCTAGCGCTTACCCAGTCAGACCTTATACAGAAGGCTGGTGACACAGAGCTGGCAGCAGTGACCAAGTCACTACTGTCGGTGAGAAAAGAGAAAGCCCCTCTACATCTGGTGTGTACACAGACAATCTGTGGCATCATCACGAAGGTGTCGCAGTCACAGTTCACCGAGCACGTATGGCCTGCCCTGGAAAGTGACCTCAGTACTGGATGGGAGAAGTGTTCGCCCGACAAAATCTTGATGCTCCTTACTGCCACCAGATGGCACCCGATGACGGTGGACAAGGCGTTTCTGAAGAGTCATTGGGGTTGTAAACGACTAGTCAATGTGAATACCTGTAAACACATTGCACAGGTTTATCTGCAATCAACAGTCAACCACCCAGTCATCCATCCTGTGTGTGTTGAACTCCTCACAGATGCCTTCCAGCAGTCGAACGTCTTCCCGACATTTTGGAAGGAAGTTATAGATGACTCGCTCCTGCAGCAGCGAACATCAAAAAAGTACCTGTGTCTCCACCTGGTGCCATATGCCCTCAAGCTCAGCAAATCTGTGTTACAGGTGTCTGTGATTCTTTCAACAAATCTTGTTGCGTGCATCATGGGGTTCCTAGCCAATCGAGAGCACGCGCTCCATGATGCTGCGGAACACTTGGTCCAGCAACTGACCTCGTATGTGTCATCTGCTGAAGTGACAGCTGAGGTTAAGGTTGCCGTGGTGAATGCTCTACTGAGCATGCCCAGTGGGGCCGTAATGGACCAGTCTAAATCTAAGTTGTTTTCCAACTTGATTACTAGGTTGGACCACGAAGCGGCGGACATGTTGTCTTGTGTGCTTATGAAACTGGTGCGAGGGGAGACAGACAGTGAGGAGATTACCCCGCTCACAAACCTTCCCACTCGGTGGGTCATACAACAACTATGTGCTATGACAACGATGGTCTCCATGGCGACAGACAACGTGTGGCAACTGAAGATTCTGCAGTTTCTGTTCTTGAATTCGTTCTTTAAAGTGGTTGAACCGACCGAAGACATCCCACACTGTGATAGGCCAAGTGTACCACCTCTGACAGATGCTCTCAGACACACTGTGCTCGATGGCTTCTTCAAAGTCCTCAGTAAACTGGCCACATTCAACACAGATAAAGGCATTGCCAAGGACCACACTTGTTACATTGAAGTGCTGCACGGTCTCGTCAAATACGCACAGACCCTACTGGACAACCCACAGGTGGCAGCACCAGTTAAGGACTTCAACGAGGAGACTCGAGAACAGTGGTACAAAGTTGTACAGGTGCTGTCCAAGATTAAGGCCAAGCAAGATAAAGAGAAGCGGATGAACGAAGGACGCGCCTTCCAGTTACTTTATCTCCATCTCGGTCTACAGCTGTTTACACACCAGAGGGAGACACTTGATGTGTTGAAGGATCTTCATGGGTGCTACGAACGAGCTTTTCGCAAGAGACGAATGTCAATCAAGAAGCTAGACTTGACGGAACCTGAATGGGTTGAGGTGATCACCGAACTGCTCCTGAGCATGCTGTCCGAGCAGAGCCACCTAGTGAGAGTTGTTGTCAACACCGTGTTCCGAATGCTGTGTCCACACATGACAACGGCCGCTCTGCAGTTGATACTTGACGTGTTCACCACAGACACCGAGGATGATGGACCACTAGACTTTGAGGACGAAGAAGACGAAGGCAGCGACTCCCAGGAAGGGGAAGGGGAAGCGGAAGGGAAGAGGAAAGTCAGGAAGGAAGAGGAAGATGAATCGAGCGACTCTGACAGTGACAGTCTGGAAGAGGTGGAGGAAGAAGTCGACGAGGAGTTGAGGTCAAAGGTCAAAGCTGCTCTCGGAAAGGGTGCCGTGTGTAACCATGAGGAAGAAGAAGACGACGACTTGAGCGACAGTGAAATGGCGAAGTACGATGACGCTCTGGCAGCCATCTTCAAAAAGAAGGGACAGGGAAAGAAAGAGCAGAAGGAGCGGGAGGTGCAACTGAAGCACTTCAAAATGAGATGTCTCGACTTGTTGATAACCCTCGTCCAGAGTCATCCGCAGCCCAGTTTGCTTCTGCACCTACTGCGCCCCCTGTTGGAGCTGGCAGAAAATGCGCTCAAGGACAAGACAATGAAAGATCTTGGAAACAAGACAATCAATGTCCTGCATCACTTATGTCATCCAAGGAAGCTTCCACCGGACACAAACATTGATAAGTGTGAGTTGCCAGAAATGTTCAAGGAACTTCTTTACTTCTCGGCTAAAGTGTCAAGTTTTCCTCTCATCAATGAAGTGGCCAGTGCTTGTCTGTTTCTGGTGAGAGTGATGCTGGGCCTGGAGAGTAACGCTGGGCCATCCCCCATGCGCACCAGGGCAATGAAGGTCAAGAAAGACCAGTCGAAGCCAAAACAAGACAAGGACATTGACAATCTCACGCGAATCCACATGGTTCTGAAGGATGCCATTCAAGAGTACTGCGAGAAAAGAGACACTAACCTGGACCACAGACTGTTTCTTTGTGTCCTTGAGCGACAAGCTGCTCTGCTGTGGCCTGTCACCGACTCCCTGCTGGGATACGTCAGGAACACAGACATACGACTATTCTGTAGGACACAGGTGTGTGCCATGTTGGCTGTCATGATCAGCAAACAATCTGTGCAGTCATTGGGCATGGAAAACTGGCAGCAGTTTGCGAAAGAGCTGATGAGAGAACTTTATCAGGTTCTACAGCAGTTTGGTGAAGACAACGTGAAGCCAAGGATCATGCGTCATATTCTCTTTGTCATGTACCGCACTTTAACCTCTTCCTCTCAGGACACTATCAAGGATCTTGTGTCTGAAGATCTCGTTCGCAGTGTGCAGAAGGTCAAGGTCATGGTGAACAAGGTCAAGGACACAAGGATTATGTGCAACAAGTTGCTTGGTTTCCTTGCAAGCAGAGTCTCAGTTCCAGTTGATGGCAGTGAGAAGACAAAGAAAAATAAGAAAGAAAAAAGGCAGGAGGAGAATGGAGAAGAGTTTGTGACACCGAAGAAGAAAGCCAAATCTTCTCCTGTGAGCCCATCCGCGTCCATTGGCAGCTTGTCGTCATCAAAGAGGAAGAGGGAGAGGCAGAACTCGACAAACGGGACAGAATTACAACCGGAACAAAACGGTAACCTGGCAAATGGAACTGCAGAAGAAACCACGATTGCTGCAAAGTCCCCCGTCACAAATGTTGACGCTCAATCGCATAAAAAGACAAGTGCGAAGAAAAGGAGAAAGTCAAATGCAGGTGACAATTCGCTGGCAATGTCCAGTGAACATTTGAATGAGTCGACGGTAAAAGAAGCAGACTCTTCTCTGCATGAACTTACTAAGAAACGGCGGTCACTTGCCACCCTGGTGGGAGAACCTGACACTCCAGGTTCAAGCCAAAAACGGAAGAAAAACAAGACGAATTCTGCTGCTTGAAATAGGTGGTTTGTCTATGTTAACATGAGCAACTGTTATTGACCTAATCATGCTGTCTTATGATATAATATTGCCTAGAATCAGAGAACCTTATTCATCTTTTTCGCAGCACAAAGATTGAAACGAGTGCTGTATTTATGAATAAATAAACCTAATACACACCTTGTATGCAATTGTCTAATTTCAAGTGTGATTTACCAAGTGAAACAAAGAAAATTGTTTAACTATTACGCCCTATTCCCGCTGTCTCACAATTTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04931	DNA_pol_phi	DNA polymerase phi	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007015	Family	DNA polymerase V/Myb-binding protein 1A	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13213	MYB-BINDING PROTEIN 1A FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-