Gene detail

Detailed information of Lsat_s016.g0178.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s016.g0178.t1	PHOSPHATIDYLINOSITOL TRANSFER PROTEIN	Lsat_scaffold016	4479161	4542739	-

Gene Structure

More details in Jbrowse Sequence

CDS

Lsat_s016.g0178.t1

ATGTTGATCAAGGAATATCGTATTGCTCTGCCGATGAACGTTGACGAGTATCGCATTGCTCAGTTGTACATGATACAGAAGAAGAGCCGGGAGGAGAGCGAGGGAAAGGAGAGTGGGGTAGAGATCCTCATCAATGAACCCTACACAGACGGCCCAGGAGGGAGCGGCCAGTACACTCGTAAAATATACCACGTAGGAAGTCATCTGCCAGGCTGGTTCCAGGCTATACTTCCCAAGTCTGCCTTACAGGTCGAGGAGGAAGCGTGGAATGCGTATCCCTACACCAAGACTATTTACCGCTGCCCTTTTATACAAAAGTTTATGCTAGAGATAGAGACACGCTACTATAATGATGGTGGTGACCAGGAGAATGTATTTAACCTCTCGGCCGCAGAACAGCGCAACCGGGTGGTTGACCATCTGGATATTGTCAGAGACACAATTTCGTCCGGAGACTACAAGAGCGAAGAAGACCCGGAACTGTTCAAATCGAAGCAGACAGGTCGTGGCCCCCTGGAGATGGACTGGCGGCAGAAGTATTCGAAGGCGGCCTGTGACCCAGGCCGTAACATGGCCATCATGTGTGCCTACAAACTGTGTAAAGTAGAGTTCCGTTACTGGGGCATGCAGAGCAAGATTGAGAGGTTTATCCATGACGTAGGTTTGCGCAAGACGATGTTGCGAGCCCATCGCCAGGCATGGTGTTGGCAGGACGAGTACTACGGACTCACTATGGCCGACATCCGCAAACTTGAGCGAGAGACGCAGCTCGCCCTAAAGAAGAAAATGAACGAAGATGCGGACAGGGACTCAACCGTCGTGCTGGATGTGACAGAGTCGACGCCGCCTCCAGGACTGTCAGAGAACAACACAAGCCCTCCTGACAGTGATGTGGCAGTGACAAGCATCACAACAGAGTCACACCTGCCTGTCAACCAGGAAATTCCTGCAATGAGACTGGCCTCTACTCGACTGTCTGGCATCGACCCAGGTTGCAGGAAGGAATCCTGGGCATCAGTCAGATCGGCTTTCAGTCGACCAGGGTCCAACCTAGCACTGTCTGACTGGCAGCAGATGGACAGTCTGGAGCAGCTGAGAACACCAAGTTCAGATGAAGACGAAGAGTTCTTTGATGCATATGACGAGCTGCATGGAGGTGTTGCGAACACGACGGTCCTGCTCAAGTCTAGCTCTATGGACATGTTGAATGTGGAAGAGTCAGACTTTACAGACTCTCACTCAGGGGAGACAGCGACACCCCTTGACCGAAGGATGGAGCAATACCTCCAGTCAATCAGTCAATCTGGGGAGACATCAGTTCCCTCTATGCCTCTCTCCCAGGGAGGAAACTGCCACACCACTGTCCTCTTCCTTGTGCTGCATGGAGGGAGCATCATGGACAGTAGCTTTGACCAGCTGCCGATGAACTCGGACATTGCAACTCTCAAGTCGACCTTTGACACGGTCATCCAAGCCCACTATCCTGCCATTAGTGGTCACATAGCGGTCAGACTTGTCCCCTGTCCGGCCATTTGCTCAAATACCCTCAATTTGCTCAACAGCATAAACCCTGCTGGCTACAACGAGGCTGCTGACACCAGTGGCAATGACGCCCCAGTGACTGCCAAACAGAACTTCCTCCTCAACACAATACCACTGTTTGCAACTGGGTCGCCAGCATACGCAGACACAGTTAAACAGGTGATCGCTCGGGCAAACAACGTCTTCAGTGAGTTCACGCGTACTGAGGAAGGGCTTGGATTCACAGGCCAGGTCTGCCTATTGGGAGATAGTATTGGCTCCATCATTGGCTACGATGCCTTGTGCAAACATTTTGTGCCAACACACATGAAGCCAAGCGCCTCCGACAGCGAAACATCTCCCACCGACCTCGAGTGTAACAGTAGTACTGGTGGTGTCACCTGGCGGACAAACCTGGAAACAATCAAACAGATGAGTTTCAGTAACCCTGATATGAGTGGGGTAACGGGTGGCGAAGAACATACAGTCAACAAAGACGGTGTTATGGCAGAAGCAAAGGATTCTGGGACAGGACGGGAGAATTCTACATGGAAGAGACAAACGTCATGTCCAAATTCTCGCCGGACGAGTGCGATCAGCCAGTCAACTTCATCCAGGTTCAATTTTGACGTTTCCGACTTCTTTATGTTCGGCGCCCCACTCGGCCTCGTCCTTGCCTACCGCAAGATGTGTCTGTATGATTGCACAAATATTCCACTGCCAAAACCCCACTGTCTGCAACTGTACAACTTGTTCTATGCGTCCGACCCCGCCGGGGTGAGACTAGAGCCTCTGCTCTGTGACGGCTTCACACATCTATGCCCTATGAACATCCCGCGCTACCAGAAGTTTCCCCTCGGCGATGGCCAGGCAGTGCATGTGGTGGAAACTATCCAGGCCAACTTGTCAAGGTTCGTGGACCTCCCCCCGCCCTCCCCTTCCCTCAGTGGTGAGGAACCAGACCTGGAACGGAGACAGAGCAACATGAGCATGCTCAGTCAAGTGTCGGGACGCATCGATTTCGCTGTCGCCAGCATCAACACAGTGACGTCCCAGTGGTGGGGGAACAAGAGGTTGGACTATGTCCTGTACTGCCCAGACGCACTCCAGTCCTTCCCTCACACAGCTCTCCCCTATCTCCTTCATGCTAGCTTCTGGGAATCGACAGATGCCGTCGCATTCATTCTCCGACAGGTGGTGCGCCAGGAATTTATAACGCTGCAGCCTGAGAGCCAGAAAGAGGCTTCGCTGTTCAGTCCTGGTCAGCCGCGAGAGAAGTGGTTGAAACGTCGCACTACAATGAAGCTACGGAATGTTGCTCCGAACCACCGAGCGAATGATGTCATTGTCCTGGAAGGGCGAACTCAGACGTTGGTCGCCCGATTCATGTATGGACCTCTGGACATAGTGTCCCTATCTGGAGAGAAGGTGGACGTGCACGTGATGACAGCGCCTCCGCAGGGCGAGTGGCAGTTCTTTGGCACGGTGGTGACAGAAAGCAATGGCAAGGCCACCTTTGAAGTGCCCAAGGATAAGCTACTGAGTCTTGGAATGTACCCGGTCAAGATGGTTGTCCGGGGAGATCACACGTCTGTTGACTTCTACCTGGCTGTGCTACAGCCTAAGGCTGAAGTGGTAGTGTTCAGCATTGATGGGTCCTTCACTGCCAGCGTCTCAATCATGGGCAAGGATCCTAAAGTGCGACCCGGCGCCGTCGATGTTGTCAGACACTGGCAGGACCTTGGCTACCTGATCATCTATGTGTCGGCGCGACCAGACATGCAACAGAAGAAAGTAGTGACATGGCTGGCGCAGCACAACTTCCCCCATGGCATGGTGTCCTTCATTGATGGTTTGTCGGCTGAACCACTCAGACAGAAGGCCATCTATCTCAAACAGCTCAGGAACGAGGCCCAGATAGAGATCCACACAGCATACGGTTCCAACAAGGACATCTCTGTCTACCAGTCGGTCGGTCTACATCCACCGCAGATCTACATCGTGGGAAAAGTATCAAAGAAACATCACAAAGATGCAGTTGTGATATCTGAAGGCTACGCAGCCCACTTGGCATGCCTGGCGTCAGACAGTGCTTCAAGACCAGCCACGGGAAACACACGCATGTTCCTGCGCAAGTCCTGCTTCAGCCTCCCCGGGCAGAACCAGGGATGTGGTCGGAAGAAACAGGTGAAGAAGACGACATCCCTTCCTCCGACTGCAGTGTCCCGCTCTGAATTGCTCTGCAAACGACAGGAAGTAGGATCTGTCTCGATCGGGATAACCGAAGATAAAAGCACTGTTGTTGAGTCAACGGGTTCACTCCCAGGCAGCATGAAAAAGAGATGGTCGGGACGCAGCATGTCTCCACGGGCGGGAATTGAATAA

Transcript

Lsat_s016.g0178.t1

TGCACGTTCACATTCACGAATGTTTCACCAGGTGACGCTGATCGCTGATAAACATTGCCTAAAAATCAGAGGTTCAGGCGTTAATGCTACCCAGTAAACGGTCTCATAAACGGATTACGGTTTAAGTGTTTCTTGTACGATCCTGGGTTAACATGAAGTGAACATGGGAGGAAAGTTCGTGTGACAGCCGCTCATCAGAAATTCACAGGGACATTCATAGCATGTGACACTGTCAGTAACAGGAGAGACATACGGTCACAGTCATGTTGATCAAGGAATATCGTATTGCTCTGCCGATGAACGTTGACGAGTATCGCATTGCTCAGTTGTACATGATACAGAAGAAGAGCCGGGAGGAGAGCGAGGGAAAGGAGAGTGGGGTAGAGATCCTCATCAATGAACCCTACACAGACGGCCCAGGAGGGAGCGGCCAGTACACTCGTAAAATATACCACGTAGGAAGTCATCTGCCAGGCTGGTTCCAGGCTATACTTCCCAAGTCTGCCTTACAGGTCGAGGAGGAAGCGTGGAATGCGTATCCCTACACCAAGACTATTTACCGCTGCCCTTTTATACAAAAGTTTATGCTAGAGATAGAGACACGCTACTATAATGATGGTGGTGACCAGGAGAATGTATTTAACCTCTCGGCCGCAGAACAGCGCAACCGGGTGGTTGACCATCTGGATATTGTCAGAGACACAATTTCGTCCGGAGACTACAAGAGCGAAGAAGACCCGGAACTGTTCAAATCGAAGCAGACAGGTCGTGGCCCCCTGGAGATGGACTGGCGGCAGAAGTATTCGAAGGCGGCCTGTGACCCAGGCCGTAACATGGCCATCATGTGTGCCTACAAACTGTGTAAAGTAGAGTTCCGTTACTGGGGCATGCAGAGCAAGATTGAGAGGTTTATCCATGACGTAGGTTTGCGCAAGACGATGTTGCGAGCCCATCGCCAGGCATGGTGTTGGCAGGACGAGTACTACGGACTCACTATGGCCGACATCCGCAAACTTGAGCGAGAGACGCAGCTCGCCCTAAAGAAGAAAATGAACGAAGATGCGGACAGGGACTCAACCGTCGTGCTGGATGTGACAGAGTCGACGCCGCCTCCAGGACTGTCAGAGAACAACACAAGCCCTCCTGACAGTGATGTGGCAGTGACAAGCATCACAACAGAGTCACACCTGCCTGTCAACCAGGAAATTCCTGCAATGAGACTGGCCTCTACTCGACTGTCTGGCATCGACCCAGGTTGCAGGAAGGAATCCTGGGCATCAGTCAGATCGGCTTTCAGTCGACCAGGGTCCAACCTAGCACTGTCTGACTGGCAGCAGATGGACAGTCTGGAGCAGCTGAGAACACCAAGTTCAGATGAAGACGAAGAGTTCTTTGATGCATATGACGAGCTGCATGGAGGTGTTGCGAACACGACGGTCCTGCTCAAGTCTAGCTCTATGGACATGTTGAATGTGGAAGAGTCAGACTTTACAGACTCTCACTCAGGGGAGACAGCGACACCCCTTGACCGAAGGATGGAGCAATACCTCCAGTCAATCAGTCAATCTGGGGAGACATCAGTTCCCTCTATGCCTCTCTCCCAGGGAGGAAACTGCCACACCACTGTCCTCTTCCTTGTGCTGCATGGAGGGAGCATCATGGACAGTAGCTTTGACCAGCTGCCGATGAACTCGGACATTGCAACTCTCAAGTCGACCTTTGACACGGTCATCCAAGCCCACTATCCTGCCATTAGTGGTCACATAGCGGTCAGACTTGTCCCCTGTCCGGCCATTTGCTCAAATACCCTCAATTTGCTCAACAGCATAAACCCTGCTGGCTACAACGAGGCTGCTGACACCAGTGGCAATGACGCCCCAGTGACTGCCAAACAGAACTTCCTCCTCAACACAATACCACTGTTTGCAACTGGGTCGCCAGCATACGCAGACACAGTTAAACAGGTGATCGCTCGGGCAAACAACGTCTTCAGTGAGTTCACGCGTACTGAGGAAGGGCTTGGATTCACAGGCCAGGTCTGCCTATTGGGAGATAGTATTGGCTCCATCATTGGCTACGATGCCTTGTGCAAACATTTTGTGCCAACACACATGAAGCCAAGCGCCTCCGACAGCGAAACATCTCCCACCGACCTCGAGTGTAACAGTAGTACTGGTGGTGTCACCTGGCGGACAAACCTGGAAACAATCAAACAGATGAGTTTCAGTAACCCTGATATGAGTGGGGTAACGGGTGGCGAAGAACATACAGTCAACAAAGACGGTGTTATGGCAGAAGCAAAGGATTCTGGGACAGGACGGGAGAATTCTACATGGAAGAGACAAACGTCATGTCCAAATTCTCGCCGGACGAGTGCGATCAGCCAGTCAACTTCATCCAGGTTCAATTTTGACGTTTCCGACTTCTTTATGTTCGGCGCCCCACTCGGCCTCGTCCTTGCCTACCGCAAGATGTGTCTGTATGATTGCACAAATATTCCACTGCCAAAACCCCACTGTCTGCAACTGTACAACTTGTTCTATGCGTCCGACCCCGCCGGGGTGAGACTAGAGCCTCTGCTCTGTGACGGCTTCACACATCTATGCCCTATGAACATCCCGCGCTACCAGAAGTTTCCCCTCGGCGATGGCCAGGCAGTGCATGTGGTGGAAACTATCCAGGCCAACTTGTCAAGGTTCGTGGACCTCCCCCCGCCCTCCCCTTCCCTCAGTGGTGAGGAACCAGACCTGGAACGGAGACAGAGCAACATGAGCATGCTCAGTCAAGTGTCGGGACGCATCGATTTCGCTGTCGCCAGCATCAACACAGTGACGTCCCAGTGGTGGGGGAACAAGAGGTTGGACTATGTCCTGTACTGCCCAGACGCACTCCAGTCCTTCCCTCACACAGCTCTCCCCTATCTCCTTCATGCTAGCTTCTGGGAATCGACAGATGCCGTCGCATTCATTCTCCGACAGGTGGTGCGCCAGGAATTTATAACGCTGCAGCCTGAGAGCCAGAAAGAGGCTTCGCTGTTCAGTCCTGGTCAGCCGCGAGAGAAGTGGTTGAAACGTCGCACTACAATGAAGCTACGGAATGTTGCTCCGAACCACCGAGCGAATGATGTCATTGTCCTGGAAGGGCGAACTCAGACGTTGGTCGCCCGATTCATGTATGGACCTCTGGACATAGTGTCCCTATCTGGAGAGAAGGTGGACGTGCACGTGATGACAGCGCCTCCGCAGGGCGAGTGGCAGTTCTTTGGCACGGTGGTGACAGAAAGCAATGGCAAGGCCACCTTTGAAGTGCCCAAGGATAAGCTACTGAGTCTTGGAATGTACCCGGTCAAGATGGTTGTCCGGGGAGATCACACGTCTGTTGACTTCTACCTGGCTGTGCTACAGCCTAAGGCTGAAGTGGTAGTGTTCAGCATTGATGGGTCCTTCACTGCCAGCGTCTCAATCATGGGCAAGGATCCTAAAGTGCGACCCGGCGCCGTCGATGTTGTCAGACACTGGCAGGACCTTGGCTACCTGATCATCTATGTGTCGGCGCGACCAGACATGCAACAGAAGAAAGTAGTGACATGGCTGGCGCAGCACAACTTCCCCCATGGCATGGTGTCCTTCATTGATGGTTTGTCGGCTGAACCACTCAGACAGAAGGCCATCTATCTCAAACAGCTCAGGAACGAGGCCCAGATAGAGATCCACACAGCATACGGTTCCAACAAGGACATCTCTGTCTACCAGTCGGTCGGTCTACATCCACCGCAGATCTACATCGTGGGAAAAGTATCAAAGAAACATCACAAAGATGCAGTTGTGATATCTGAAGGCTACGCAGCCCACTTGGCATGCCTGGCGTCAGACAGTGCTTCAAGACCAGCCACGGGAAACACACGCATGTTCCTGCGCAAGTCCTGCTTCAGCCTCCCCGGGCAGAACCAGGGATGTGGTCGGAAGAAACAGGTGAAGAAGACGACATCCCTTCCTCCGACTGCAGTGTCCCGCTCTGAATTGCTCTGCAAACGACAGGAAGTAGGATCTGTCTCGATCGGGATAACCGAAGATAAAAGCACTGTTGTTGAGTCAACGGGTTCACTCCCAGGCAGCATGAAAAAGAGATGGTCGGGACGCAGCATGTCTCCACGGGCGGGAATTGAATAAGGCAGATTGAAGGGAAGGTATAAATTTTCATTGGTTAATTAAATAAGGCAGATTGAAGAGAAGTGTTATATAGCTCTTGTTGTATGTGTGACTATTATGTTATATAGCTCTTGTTGTATGTGTGACTATTATGTTATATAGCTCTTGTTGTATGTGAGACTATATACATTATATAGCTGTTGTTGTATGTGTAACTAGATGCACAGACACTGTTATTTGTAGTTATGCTATTGAAAACAGTACTGCTGTATCCCCATATCTAGGCTTGTTAATTTGTCCCATTTGATATATTGTTGTCTCAATGTCCCGTAATGTTGAGAAAACATTAAATATTGCCAGCTTCTGTGAAGCTTCCTATACGAGTAAGTGCTTTACCTCAAGATGGCTACTTTCAAGTCTCACAACATTTTAAATTGGCTCTTAGCAAGTGTAGTAAAGTAAATAACACATGCTTAATGAACTGAAATGTAATAAAATTAAATTGTTAAAGCTTCACTGTCCACTTAAAGGTGTCTTACATTTTATTGCAGAAAATTAGTGTTTTCGACTTCCTGCAGAATTTCTTTTTGAAAACTTGGTAATATCAGGTTTCTTGTTATAATTGTGTCCCCTTGGCTGGTCAAAGATTGTCTTGTCTGGGTTATATAAAAACGAGTGTCTATGACTGATATTGAAAGTATTAATTTTAGCTTAATTTGATGGCTTAATCTCATTCGATAGATACAACCCTGTGTTTTGTTTCATTTATGTAAATAGGAGAACTGCCTCGGGTGTGTGTATATGCTATGTCCGATGCAGGAGTTGTTTGATTTGTATTAGTATTAATATTCATGTTTTTGTGATGTTACTTTTATTGTGGTTAATGTCTAAGTCATTATGTTCAAGAATTGATATTAATTAAACATAGACTTGTTCGTAGTTGGGACACGGTATGCTAAGTTGTCACTCAGCCGTTAACAAGGCTCACTTACACGTATTTATGAGACTTTATCATGTGCTGTGGTAGTTCTAGAACCATAGAATTTTATATTTTCAAGTTTCAGGGCACTGTGATATAACAATGCCCTGTTAAAGGTCGTGTTTGTTGCATCGAAGGAAAATGTATAAGAACATTACAAAAATTCTTTAGAATACTTATTATTATTTTTTTCACCACTGGGAACTCCGACAATGTGCTCACCATAGACTAGTCTCTGTATGATAACAAGTGTAACCATTCTTTTGAATACAAGTTTATTATTTGTTAATTTTTATCACTGGGAATGACAATATATTTTGTTGGCAATGTGCTCACTGTTGCTATGTCTCTTTACCAAAAGTGGTTTTAAATGTTGTACTGGTTTAACGAAATATTATGCATAGAGAAACTAAAGGTTTAGCTGACATATATACCGTTGTTGACACATACATATGGTATAAGCAGAATTTAGATATTACATGTATACTATTCGTTTACACATAAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02121	IP_trans	Phosphatidylinositol transfer protein	Family	Interproscan
PF02862	DDHD	DDHD domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001666	Family	Phosphatidylinositol transfer protein	Interproscan
IPR004177	Domain	DDHD domain	Interproscan
IPR023214	Homologous_superfamily	HAD superfamily	Interproscan
IPR023393	Homologous_superfamily	START-like domain superfamily	Interproscan
IPR031315	Domain	LNS2/PITP	Interproscan
IPR036412	Homologous_superfamily	HAD-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10658	PHOSPHATIDYLINOSITOL TRANSFER PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005548	Molecular Function	phospholipid transporter activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008525	Molecular Function	phosphatidylcholine transporter activity	Interproscan
GO:0008526	Molecular Function	phosphatidylinositol transfer activity	Interproscan
GO:0015914	Biological Process	phospholipid transport	Interproscan
GO:0031210	Molecular Function	phosphatidylcholine binding	Interproscan
GO:0035091	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-