Gene detail

Detailed information of Lsat_s016.g0086.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s016.g0086.t1	RIBOSOMAL PROTEIN S6 KINASE	Lsat_scaffold016	2404302	2436870	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s016.g0086.t1

GCTTGGCATGATGATGTATATTTACGCCACGTGCTCAGGCAACCTTTCAGCCAGTGTGCAGGAAAAGTGATGAAAGTGTGCAGACTGCTTCAGAATGTCTGAAGCTTGGTAATGTTCCGAAATGTGCGAGGTAAAATTTTATCTGGTTCAAGTCTGACCTGCTTTGACATGATGTGCTGTGGCTTGATGTTGATACCATTACTTTTAGTTGGCCATGTATCGTTCTGTTGTGTCACTGTACAGTATGGACTGAATTGTGGTAACGAGAAATGTTTGTACACATTATGGTAAAAGTGAATAATAACTTTTCTAAATGTTATCAAACATTGAGGCAGAATAGTGCTTGATAATTTTTTTTATCATTATATCACATGGCAAGGACAAGTGTTGGCTCTTTTCAGTCGATGTATGATGCTACCTCTGTTTTGTACATGTACAATTTCCATCACAATTATTCCATATGATTCTTGTTTCCATTGAACCCTGTCTGATACGACCACTAAGAGACGTGGTGTATTTGTGAGAGAGCCAATCATTCTACAAACGTTGGTGATGAATGAAAATGTTTCATATATTTGTGAGTCTGATGTGTCCGTTTTCTAAACAGTACAGCTATGTTTAAATGGATTGATGTTCTGGTTTCTTGGAATCTGTATCTGATATTTGACATGGTAATTACCTCTCACGAAATCTGGAGACTCGTGACGTGTCTGTAGTGATGTCAGCATGGTGATTATTCAGAAAAAATGCAAAAATGTTTCTTGACAGGTAATTACTTTGTCAAGTATAGCATTCCAAGAAACGGGAATGTCATTCAGCATAATTGTGCTGGATAAAATACAAAGTATAGTACATGATTACTGAGGCCCTTGTAACAATGGGGTTTCTTGCAATGATTGTTTGGAAGATTGGTAACAAAATATTACAAGATACATGTTTATATTTTGACTGGGTAATGTCACAGAAAAATTCAACAATTACCAAGCTTCAGTACTTCATGCCAAAGATGTGTTTGACATGTTTTGGGCATGGATTACTGAACTTTGTGTTGTATAATTTGGTAGTTGAAAAAAATGAATGTTGCATCAGGGTAATTGAAAAAAATTACCCTGCCATAAAACTCTGACCAGTTATGGCATGTACTATGCAAGTTTAAGTAATTGTTGTTAAGTTACAATGTTTGTTTTTTGAAAGAAGAAGTTGCATCTGGCTGCAAGTTTCAATAATGTCTTGACTGCATTGGCATATTAAAAAATAACTGAAACTATATTGAAAGAAATGTACGGTTTGTAGTGAACAAATATTGTTCATTTATTTTTTGTATAAAATCGTTTGTTTAGGTTATGTACTCATTGACTACCATTGGGCACGTGATGTGAGGTGTATGTTACAACCTGAATAATGCACACCAGTCTGAATGTTAGAGATATGTTATTTCAGAGTTAAGTTCTGTCCTTAATGTTGGAGACATGAATTCAGTTTGTGAAAGCATCATTTGTCGTACAAACAGTATTTCTGCTTAGCATTCCTCTCAGGATGCGAAATGGCGGGGGTGTTCGATCTGGAGTTGAACGAGGCTCAGGCTGACCTAGAAGATATTTCAGACGAGGAAGCCATCGAAATAGCCGATGACCAGTTGGAGAAAGTGCTCGAATCTGGACCAAACATGGACTTCTTTGGTGACGGAGTGGAGACACTGGAGTTGTCCGAGTATACTGTCAACCCAGGCCAGCCAAAGACTGGACCATACGACTTTGAACTACTGAAGTTGCTGGGAAAGGGAGGATATGGCAAGGTGTTTCTTGTGAGAAAGACGACAGGTAAAGAAGGCGGCCAGATTTTTGCCATGAAGGTGCTTAAGAAGGCTACAATTGTACGCAATGCCAAAGACACGGCGCACACAAAGGCCGAGAGAAACATTCTGGAGTGTGTGAAGCATCCTTTCATCGTTGACCTGCTCTACGCCTTCCAAACGGGTGGCAAACTCTACCTCATTCTCGAGTACCTCTGCGGAGGAGAATTGTTCATGCAGCTAGAGAGAGAAGGCATCTTCATGGAAGACACCGCCTGCTTCTATCTGGCAGAAATTACCCTAGCAATTGAGCATCTGCACAGTCAGGGCATTATCTACAGGGACCTGAAACCAGAAAACATTCTACTTGATGCTTATGGTCACGTCAAGTTGACTGATTTTGGTTTATGCAAAGAGTCGATCCACGATGGTACGATGACGCATACCTTCTGTGGAACGATAGAGTACATGGCGCCGGAGATCTTGACTCGAAGTGGCCACGGCAAGGCAGTTGATTGGTGGAGCCTGGGTGCCTTAATGTATGACATGCTAACGGGAGCTCCACCATTCACGGCAGAAAACCGCAAAAAGACAATAGACAAGATTTTAAAGGCCAAGCTGAATCTGCCCCCTTACCTGACGAACGAAGCCAGGGGACTTCTCAAGAAACTGCTGAAGAAGAATGTGCCCGACCGACTAGGAGCAGGCACTGAGGATGGCACGCCGATCAAGTCCCATCTGTTCTTTAGACATGTCAGCTGGGACGACGTCTTGAACCGGCGGCTAGAACCTCCTTTCAGGCCCACCCTAAGTGACGAGACAGACGTGAGTCAGTTCGACAGTAAGTTCACGAAGCAGACGCCAGTTGACTCTCCAGATGACGCCACTCTCAGCGAGAGCGCGAACCAAGTCTTTTACGGCTTCACTTACATTGCCCCGTCAGTTCTGGAGGAGATGACGAAGCCCTGGTTATCGATGAAGGAGCCGCGATCACCCCGTAAAGTTGGCCTTCCTATGAGCCCACCAGGAAAACGCTTCGCCTATGATGGAGACCGTCCGACTGACAGCTGCGTGGCATGCACCATCACCGACGAAGCAATGGACATGGCATCTGCGTCCAGTGTCCAGAATGTCCTTCCACGCTCAGCTGCAATTGCCACGGGCAACCCGACAGGCAAGCCACAGGCGTTCCCAGGAACGCATAATCGACCACCACATTTACAAATGATGTGACGTTCATGACCGTCTCAAGACAACGTCCATGCGAACTGTCCACATGCATGAATGTTTTGACGTCGGTCTGACATTAGGAAATCTTCAGTTGTTCAGCATTGTTCTGGCTCTTGTCTGCTGAATGCAGTACTGCCACCTATGAGACAGTGCTGTCGGCCGCCATGTACAAAACCTGAAAGGAAAATGGCCGAGAGAAAACATTGTTTTTTCTTAACAACCCACAAATCCAAAGGTTCGGTAACAACAGCCAGAACTTGAATATTTAAGCATTTTCTTCTAAATTATTTTACTGTTATTTTGATTTTTTATCACATTTTAAGAGAATTCGATTTTTAATTAATTAACCCAGACGTAACAATATTTGTCATCAATATATGTGTGTGTGTATATATATATGTGTGTATATATATATATATATATATATACATATATTGTGCTTTCTCATCTAACTAGTATTTATATACGTAGTAGCCTTTGGGCAAGCATATCACTAGAATGAGACAAGCTCGTTTTTAGAATACTATCACACAGATATTATGCTTGACATTTGCTGCACTCTTCAATGCTAATTTCTCTGCACTATTTATGTTAAGCTTTAATCACTTTGTTTATGTTCTATTTTAAAAGCAAACATCGCAATGGTCTCTATGTATTATAATTTCAAAATTATTATAGCCATATTTAAGGTGGTTTAGTTTTATGTTTCGTTTCCAGAAATGTGCCACTTTGCCTGTGAATGGTGTAACCGTTGCTCAGCACATAATGAATTAATTGTTTATCTTAATAAATCTACTCCACAGGAAGGTGAAACGTGTATAAAAATTGTATATCTGGTGCGTAGCTAGACATTACATGTCACTGATCGATAGCGCCACCAAGCGGACTTACATAAACTAACATGAACATGAATCCCAGAGCCTATGTTTCATGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF00433	Pkinase_C	Protein kinase C terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR000961	Domain	AGC-kinase, C-terminal	Interproscan
IPR008271	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR016238	Family	Ribosomal protein S6 kinase	Interproscan
IPR017441	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR017892	Domain	Protein kinase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24351	RIBOSOMAL PROTEIN S6 KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0004674	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0018105	Biological Process	peptidyl-serine phosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-