Gene detail

Detailed information of Lsat_s015.g0356.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s015.g0356.t1	GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 1	Lsat_scaffold015	8263965	8285379	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s015.g0356.t1

CGCTCAGCCAATTGTACACTTAGGTCTTAGCTCAAAAGCCTGACAAAAGGACAGTCATCACTCGAAGTGGAAGCGTGAATGAGGACGGATATCGTAACACAGTCATATGATCACAAATTTAATTCGCCTATATCACAGACGAGTTAATATGCTTACGAAGGTGTTGCCACATGCTGTTTATGTGTGTCTGGTGTTAACTGCAGTGTTACATAGTTTAACATATGGCTTCGTAGCAACAGTGACACTTGTAGTTGTATTGTTGTTGGTGAGAGTACGTCAACATGATACCATACGTGATATGGTAGAAGAAATCCTGCCGGCAGACAAGGTTTCAGTAATAGCTCATCGCGGGGGTGGCCACGACGCACCTGAAAACACACTGGCCGCTTTCAGAGAAGCAAAAAAGAATGGAGCTGATGGTGTGGAATTTGACATGGACTTTACAAGAGATGGTATTGCTGTTCTTCTACATGACCAAAGTGTGAACCGTACAACAAGCGGTTCAGGCAAACTGTCACACATGACCTTTGCTGAAGTTAGACAGCTTGATGCCTCAGCCAATCATCCTCACAAGGACAAATATCCAAACGAGAAGATTCCAACTCTTGAGGAAGCTGTTGTGCTCTGCCTGGAACTCAAACTGAAGATGTTTATAGATGTTAAAGACCGCACAAATATTCAGAAGACAATCGAAATACTAAGACACTTGTACATAGCACATCCGCAGATGTACTCCAGCGCAGTAGTCTGCTCTTTCCATCCACAAGTTATATATGCTAATGCCCAGAAGCTACACAGAATGCCCAGGAGCTACGCAGAATGCCCAGGAGCTACACAGAATGCCCAGGAGCTACGCAGAATGCCCAGGAGCTACACAGAATGCCCAGGAGCTACACAGAATGCCCAGGAGCTACGCAGAATGCCCAGGAGCTACGCAGAATGCCTAGGAGCTACGCAGAATGCCCAGGAGCTACGCAGAATGCTCAGGAGCTACACAGAATGCCCAGGAGCTACGCAGAATGCCCAGGAGCTACAAAGAATGCCCAGGAGCTACACAGAATGCCCAGGAGGTATACAGAATGCCCAGGAGGTACACAGAATGCCCAGGAGGTACACAGAATGCCCAGGAGCTACACAGCATGCCCAGGAGCTATGCAGAATGCCCAGGAGCTACGCAGAATGCCCAGGAGCTACACAGAATGCCCAGGAGCTACGCAGAATGCCCAGGAGCTACGCAGAATGCCCAGGAGCTACACAGAATGCCCAGGAGCTACGCAGAATGCCCAGGAGCTACACAGAATGCCCAGGAGCTACGCAGAATGCCCAGGAGCTACACAGAATGCCCAGGAGCTACACAGAATGCCCAGGAGCTACGCAGAATGCCCAGGAGCTATGCAGAATGCCCAGGAGCTCCACAGAATGCCCAGGAGCTACGCAGAATGCCCAGGAGCTACAAAGAATGCCCAGGAGCTACACAGAATGCCCAGGAGCTACACAGCATGCCCAGGAGCTACGCAGCTTCTTGGGACTCATCCACTACAATCAGAACTTTCTGCACAACCTGAGCACCATGTTGGCACCCCTCCATGAGCTAACCCATCAGCATGTCAAGTGGAAATGGGGACTGAGACAAAAGAAAGTCTTTGAGGAAGCAAAAGCACTGCTTTCCTCTTCCAAAATGCTTTTGACAAAATTCAACCCAAAGATTGTGACTGGCTTGACCCACCGACCATGGGTGTTGAGCCGCAAGGTGGATGGCACTGAGTTCTCAGGACCATGGCACAAACGCCTGATATACCCAGTACTAGATGTACTGCTTGAGTGGAGCCATACAGTTTGGCTGTGGTACTTCTGTGGCAACAGTGTCTACCTCATGTTCCAGGGAGCTGTATCTGTCCGCAACATTGCATTCTACAAAGACCGTGACATTGTTCCTATTGTGTGGACTGTCAACGATGCACACCAGCAGGAATACCTGCGCCACACTCTCAAGACGTCTTATATGACAGACACAATGCACCATGAAGGCTGTGAACCTCAGAAGAACTAAAACCTTCAGTGTTGTCCCCTATTCCATTGGTATTGGTCAGTTATACAGCTCATGAAAAAACAGCGAATGTTTGGCACTGCGGGTGCATGTATGTCACCCATGTCTGGAGACATTGTAAATTACTTTCATTCATGTTTCTACAGAGAAACACTAAACATATTTCTTTTATTTAGTTTGGATTACTGTCTGACATCAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03009	GDPD	Glycerophosphoryl diester phosphodiesterase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017946	Homologous_superfamily	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	Interproscan
IPR030395	Domain	Glycerophosphodiester phosphodiesterase domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46320	GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006580	Biological Process	ethanolamine metabolic process	Interproscan
GO:0006629	Biological Process	lipid metabolic process	Interproscan
GO:0006644	Biological Process	phospholipid metabolic process	Interproscan
GO:0008081	Molecular Function	phosphoric diester hydrolase activity	Interproscan
GO:0008889	Molecular Function	glycerophosphodiester phosphodiesterase activity	Interproscan
GO:0070291	Biological Process	N-acylethanolamine metabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-