Gene detail

Detailed information of Lsat_s015.g0342.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s015.g0342.t1	UNCHARACTERIZED	Lsat_scaffold015	7765617	7806955	-

Gene Structure

More details in Jbrowse Sequence

CDS

Lsat_s015.g0342.t1

ATGTTCGGGAAGAAGAAGCAGCCACCGACTCGAAAAGGAGGAGGAGAGGCTCTTTTAAAACAAATGGGTTTGCAAGACATAGAGTCCGATCTGTATGGAGATGTAGAAAATGATGCTGAGTTGGAAGCAGAATTGGCAGCTCTACAGGCAGAGGGTAATCCCACTCCCAGGGCACAACACCAGGACGTGGGGCGCCAGGCTGGAGTAGCTGCAGTTACACACTTGGACAGCATGGTAGTATCTTGCCTCAAGGATGATGATGATAGTATTGACTCTGACACAGACCTAGATGACCCGGCGTTGTTGGCAGAGTTAGATGACTTGGCATCTGATGACGTACCTGCTGTGCAAGCGGCACGGAGCCCACTTGCTCCAGTTGCTCCACAAGCAGCACCAAGTACCCTGACAACATTAGAGCAACGACTGTCCCTGTACAGAGAAGCACTTCAGAAAGCCAACGACAGCAAGGAGAGCTCCAAACTAAAAAGACTGCAGCGTGGCATTAAGACTCTTGAGGGAATGCTGACGCAAGTAAAAGCAGGAAAGTCGATCAATGAACATGACATCCCTCCTGAGGTTGCTGTCACCAAGTCACCCCAGCATACAAGTGACTTGTCGCCAAGAAATGTGTCACAGGTGTCACCAGCTGTACTGACTCCAACACTGCCAACCCATGGGGCATCCCCTGCGACTGACATCACAACACCCGTTCCCATGACCACCCAGGGTGCCATCCCTAAACAACCTGTCACAGGGGTGAAGCGTAGTATGAGCCCAAATAAGACAAGAGAGATGCTTGTGACAAGACATGAACAGTATAAGGCAGCAGCAATGCAAGCCAAGACAGCTGGTGATCTGAAGACGGCTACCAAGTATCTAGGAGTGTCCAAGCAATTTCAGAAAGTGATTCAAGCAATGGATGAAGACCAGCCTGTTGACCTTTCTGCCATACCGGGCCCACCCCCAGGCATGATAGTTGAGACAGTGAGCAGACCATTACCACCATCAAGACTCATCCACAACAAAACACAGACCACCCCTGCAGAACAGATCATAGACGATCTTCCAGAAACAACAGATGAAGATAAGAAGCGCCTGTATGCTGCCCCACCCAAGCCAGCCACTATAATGGAAGCACTGGAGCAACGCCTGGAGAAATACAAAGCAACTGCTGAACAGGCGAAATTGGAAGGCGAAAGCAGTAAGCTGCGTAGGATGACAAGAATGGTAAAGCAATATGAGTGTGCTATCAAAAATGTGAAGGCAGGGCAGCAAGTCGACTTTGATGAACTCCCTGTACCGCCTGGATTCCCACCAATTCCACAGCCTTCTGCCAAGCCCCCTGCCCCCGTTGCTCATTCTGCAACGTCAGCATCAACTATCCCAAGCAGTACCAATATGCCATCCAAAGCAGTGTCGCCACCTGGTGTCAAGAAAACAACTCCCAGCAGACTAGAGAGCAGCAAGAGACAAAGTGGGAGTCGAGCCCAACAGCAGGCATCGTTCCTACGAGAGCGGCAGATGCAGTTCAAACAAGCTGCACTGAAAGCAAAACAGAATGGAGAAGTTGAGCTTGCTAAGAAATACTTGCGGCAGTCTAAAGGTTTTGATCAGATGATAGACGCAGCAGACTCTGGCCTTCCTGTTGACATGTCACAGGTGCCATCCCTGCCTGACTCAACTGATGTGGAAGGGTTTGTGATTGTGTCGAACCAGGATTGTGACGTCGAGTCTAATGAGATGTATGCCAGACTACAGCAGGAACTAATACAGCAGATAAAGACTGCCACTACTAATGCTGAACACTTCACACAGCTGGGCGATGTCTCCTCCGCCACTAAATTTGACAAGATGTGTCTGAGTACACGCAAAGATCTAGATGCAGTGAAGAATGCCCAGAAACATGGAGACACTGTGCCTCGCTTCCACTATGAAACAAGACACTTCTCACTTGTTCAATGCTGCACAGACCTGGGCGACAATGACTTGGAAGTGACTGTTGTGAGGGGTATTAACTACAGCACACCACAAGGTTACTCACCAAATGATCTTCAGACCTTTGTCAAATTTGAGTTTCCATTTCCAAATGATGACCCTCAGAAAGGCACAAGTGACATTAGTAAAAGCTCAAATCCTGAATATAGCCAGATGTTCAAGCTGCAGGTTAACAGAAAATCCAGAGCATTTCTACGAGTTATTAAACTGAAGGCAGTAAAGCTGGAAGTTTTCTACAAAAGGGGTTTCTTTAAAGGTGACAAAGTACTGGGCTCAGTGACTGTGAAGCTGCAGCCACTGGAGAATATATGTGTCTTACATGACAGTTACAATCTAAGTGAAGGTAAGAAGACAGTTGGTGGGATGTTGGAAGTGAAGATCCGTGTTCGAGACCCATTGCTTGGGAAGCAGGTGGAGGAAGTGAAGGAGAAGTGGCTGGTGATTGATAGCTTTGACAGACTTGCAACACATGTAGGAATGAACAGTGACAATGTTAGTAGTTCCCCAGTCGGTCCACAACACACCTACACAAGTATGGAGGTGCTCAAGTATGAGAAACAACTCCTCGATCAGCGGGTTCAGAAGTTGAAGGGCAAGTTGAATAAGTCTGAGGAGTTGACAATGCAGCAGAAGAGTAAGTTATTGGCTAAACAAGTGGAAGACACTCGTAGTGCGCTGAGAGAAGGCGAGGTGAACAACATGAGGGCATACATGGAGGCCATACAGAGGAGTCAGGCAGGATACCAGGAGGAGGCGAAGGTGATGTTAGCTCAGGGCAACAGGGATAAGGCACAGATACTTCTAACTAAGAAGAAGTTGGTGGAGAAAGAGGCAAGTCATTGCTTATTCGCACCACACAAACTCACTAATTACTTGTGA

Transcript

Lsat_s015.g0342.t1

TTTCAAGTCATAACAGACTGACAAACATGTTCGGGAAGAAGAAGCAGCCACCGACTCGAAAAGGAGGAGGAGAGGCTCTTTTAAAACAAATGGGTTTGCAAGACATAGAGTCCGATCTGTATGGAGATGTAGAAAATGATGCTGAGTTGGAAGCAGAATTGGCAGCTCTACAGGCAGAGGGTAATCCCACTCCCAGGGCACAACACCAGGACGTGGGGCGCCAGGCTGGAGTAGCTGCAGTTACACACTTGGACAGCATGGTAGTATCTTGCCTCAAGGATGATGATGATAGTATTGACTCTGACACAGACCTAGATGACCCGGCGTTGTTGGCAGAGTTAGATGACTTGGCATCTGATGACGTACCTGCTGTGCAAGCGGCACGGAGCCCACTTGCTCCAGTTGCTCCACAAGCAGCACCAAGTACCCTGACAACATTAGAGCAACGACTGTCCCTGTACAGAGAAGCACTTCAGAAAGCCAACGACAGCAAGGAGAGCTCCAAACTAAAAAGACTGCAGCGTGGCATTAAGACTCTTGAGGGAATGCTGACGCAAGTAAAAGCAGGAAAGTCGATCAATGAACATGACATCCCTCCTGAGGTTGCTGTCACCAAGTCACCCCAGCATACAAGTGACTTGTCGCCAAGAAATGTGTCACAGGTGTCACCAGCTGTACTGACTCCAACACTGCCAACCCATGGGGCATCCCCTGCGACTGACATCACAACACCCGTTCCCATGACCACCCAGGGTGCCATCCCTAAACAACCTGTCACAGGGGTGAAGCGTAGTATGAGCCCAAATAAGACAAGAGAGATGCTTGTGACAAGACATGAACAGTATAAGGCAGCAGCAATGCAAGCCAAGACAGCTGGTGATCTGAAGACGGCTACCAAGTATCTAGGAGTGTCCAAGCAATTTCAGAAAGTGATTCAAGCAATGGATGAAGACCAGCCTGTTGACCTTTCTGCCATACCGGGCCCACCCCCAGGCATGATAGTTGAGACAGTGAGCAGACCATTACCACCATCAAGACTCATCCACAACAAAACACAGACCACCCCTGCAGAACAGATCATAGACGATCTTCCAGAAACAACAGATGAAGATAAGAAGCGCCTGTATGCTGCCCCACCCAAGCCAGCCACTATAATGGAAGCACTGGAGCAACGCCTGGAGAAATACAAAGCAACTGCTGAACAGGCGAAATTGGAAGGCGAAAGCAGTAAGCTGCGTAGGATGACAAGAATGGTAAAGCAATATGAGTGTGCTATCAAAAATGTGAAGGCAGGGCAGCAAGTCGACTTTGATGAACTCCCTGTACCGCCTGGATTCCCACCAATTCCACAGCCTTCTGCCAAGCCCCCTGCCCCCGTTGCTCATTCTGCAACGTCAGCATCAACTATCCCAAGCAGTACCAATATGCCATCCAAAGCAGTGTCGCCACCTGGTGTCAAGAAAACAACTCCCAGCAGACTAGAGAGCAGCAAGAGACAAAGTGGGAGTCGAGCCCAACAGCAGGCATCGTTCCTACGAGAGCGGCAGATGCAGTTCAAACAAGCTGCACTGAAAGCAAAACAGAATGGAGAAGTTGAGCTTGCTAAGAAATACTTGCGGCAGTCTAAAGGTTTTGATCAGATGATAGACGCAGCAGACTCTGGCCTTCCTGTTGACATGTCACAGGTGCCATCCCTGCCTGACTCAACTGATGTGGAAGGGTTTGTGATTGTGTCGAACCAGGATTGTGACGTCGAGTCTAATGAGATGTATGCCAGACTACAGCAGGAACTAATACAGCAGATAAAGACTGCCACTACTAATGCTGAACACTTCACACAGCTGGGCGATGTCTCCTCCGCCACTAAATTTGACAAGATGTGTCTGAGTACACGCAAAGATCTAGATGCAGTGAAGAATGCCCAGAAACATGGAGACACTGTGCCTCGCTTCCACTATGAAACAAGACACTTCTCACTTGTTCAATGCTGCACAGACCTGGGCGACAATGACTTGGAAGTGACTGTTGTGAGGGGTATTAACTACAGCACACCACAAGGTTACTCACCAAATGATCTTCAGACCTTTGTCAAATTTGAGTTTCCATTTCCAAATGATGACCCTCAGAAAGGCACAAGTGACATTAGTAAAAGCTCAAATCCTGAATATAGCCAGATGTTCAAGCTGCAGGTTAACAGAAAATCCAGAGCATTTCTACGAGTTATTAAACTGAAGGCAGTAAAGCTGGAAGTTTTCTACAAAAGGGGTTTCTTTAAAGGTGACAAAGTACTGGGCTCAGTGACTGTGAAGCTGCAGCCACTGGAGAATATATGTGTCTTACATGACAGTTACAATCTAAGTGAAGGTAAGAAGACAGTTGGTGGGATGTTGGAAGTGAAGATCCGTGTTCGAGACCCATTGCTTGGGAAGCAGGTGGAGGAAGTGAAGGAGAAGTGGCTGGTGATTGATAGCTTTGACAGACTTGCAACACATGTAGGAATGAACAGTGACAATGTTAGTAGTTCCCCAGTCGGTCCACAACACACCTACACAAGTATGGAGGTGCTCAAGTATGAGAAACAACTCCTCGATCAGCGGGTTCAGAAGTTGAAGGGCAAGTTGAATAAGTCTGAGGAGTTGACAATGCAGCAGAAGAGTAAGTTATTGGCTAAACAAGTGGAAGACACTCGTAGTGCGCTGAGAGAAGGCGAGGTGAACAACATGAGGGCATACATGGAGGCCATACAGAGGAGTCAGGCAGGATACCAGGAGGAGGCGAAGGTGATGTTAGCTCAGGGCAACAGGGATAAGGCACAGATACTTCTAACTAAGAAGAAGTTGGTGGAGAAAGAGGCAAGTCATTGCTTATTCGCACCACACAAACTCACTAATTACTTGTGAAAAATACTTAGCACTACACAACAGTGCCAAATGTCTTATAATCCAATAAAGTTATTTATAATCCAATTAAATATTGCTGCTATGCAACAGAAGCTTCCCAAGTGACTACAAGTAATACGTTATACAACTGCCTACAAGTGTACTCTTTAGCTCACATGATGAGACTCCCAAGTGAATGCAAGTAATACGTTATACAACTGCCTACAAGTGTACTCTTTAGCTCACATGATGAGACTCCCAAGTGAATGCAAGTAATATGTTATACAACTGCCTACAAGTGTACTCTTTAGATCACATGATGAGACTCCCAAGTGAATGCAAGTAATACGTTATACAACTGCCTACAAGTGTACTCTTTAGCTCACATGATGAGACTCCCAAGTGAATGCAAGTAATACGTTATACAACTGCCTACAAGTGTACTCTTTAGATCACATGATGACACTCCCAAGTGAATGCAAGTAATATACAACTGCCTACAAACTAGGAGCAGTATTTTTTTTAAAGATACTGAAGTTGCACATGGTGGCTGTTTGTAATCTTGTATATATATGTGCAGCATGTCAGCTAATGCAGAGTTGTATGAAACTAATTATGTTGTTTATTTTAGACTATTTTAGACATATTATGACCATGGCATTTATCTATGTAAAATCTAGATAAGCAACTGATGAGCCTTTAGAAATGATTGCACATATTATACTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168	C2	C2 domain	Domain	Interproscan
PF21528	CC2D1A-B_DM14	Coiled-coil and C2 domain-containing protein 1, DM14 domain	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000008	Domain	C2 domain	Interproscan
IPR006608	Domain	Coiled-coil and C2 domain-containing protein 1, DM14 domain	Interproscan
IPR035892	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR039725	Family	Coiled-coil and C2 domain-containing protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13076	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001227	Molecular Function	DNA-binding transcription repressor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-