| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Lsat_s012.g0229.t1 | TRANSPOSON | Lsat_scaffold012 | 6376527 | 6393005 | - |
| CDS | |||||
| Lsat_s012.g0229.t1 | |||||
| Transcript |
| Lsat_s012.g0229.t1 |
| Protein |
| Lsat_s012.g0229.t1 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | E3|E3 activity RING|RING |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00630 | Filamin | Filamin/ABP280 repeat | Domain | Interproscan |
| PF00643 | zf-B_box | B-box zinc finger | Domain | Interproscan |
| PF03184 | DDE_1 | DDE superfamily endonuclease | Family | Interproscan |
| PF03221 | HTH_Tnp_Tc5 | Tc5 transposase DNA-binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000315 | Domain | B-box-type zinc finger | Interproscan |
| IPR001258 | Repeat | NHL repeat | Interproscan |
| IPR001298 | Repeat | Filamin/ABP280 repeat | Interproscan |
| IPR001387 | Domain | Cro/C1-type helix-turn-helix domain | Interproscan |
| IPR001841 | Domain | Zinc finger, RING-type | Interproscan |
| IPR004875 | Domain | DDE superfamily endonuclease domain | Interproscan |
| IPR006600 | Domain | HTH CenpB-type DNA-binding domain | Interproscan |
| IPR009057 | Homologous_superfamily | Homeobox-like domain superfamily | Interproscan |
| IPR011042 | Homologous_superfamily | Six-bladed beta-propeller, TolB-like | Interproscan |
| IPR013083 | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR013783 | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR014756 | Homologous_superfamily | Immunoglobulin E-set | Interproscan |
| IPR017868 | Repeat | Filamin/ABP280 repeat-like | Interproscan |
| IPR017907 | Conserved_site | Zinc finger, RING-type, conserved site | Interproscan |
| IPR050863 | Family | Centromere and Transposable Element-Derived Protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR19303 | TRANSPOSON | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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