Gene detail

Detailed information of Lsat_s012.g0083.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s012.g0083.t1	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	Lsat_scaffold012	2659196	2676500	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s012.g0083.t1

TTATACACAAAGATGTCTGCCTTCGGGAAGGAACGAGATCTTGTCTTTGTTTAGTTGAAGTTCGTTTCTGGATTGCAAAACAGTTGCCTGTAGATCAAAAGTATACAACATTATTTAGGTGACTCACAACATCATCATGTCTGAGGATGACTCGGAGTATGGAGATTGCAGTGATGGCAACATGGATGATGATGACGATGATGATGGATACGGCGACTACTACAAGCATGAGGAGGTAGAGATGGAGAACAAGAAAGATGACCCAGAATATTTTGAATTCCAGTTGCTGAAGGTTGAAGACGTCGATCGACTTCTAAATGAAAATGTAGAGGCACTGTCAAAAGCAATTAACGTTACACCATCTCTAGCAAAGGTTCTTCTCCACTCGCACAAATGGTGTGTGCAAGACGTCATCGACCTTCACAGGCAAGATGCGCAGAAACTTCTTGTCGACAGCCGGGTGCTGCCCTCTGTCAAATGCACTGAAAGAGTTTTGAGTCGGAACTTCATCTGCTCAGTGTGCATGCAGCCGAGCATGGCAGGCGCCCTGTGTGGTGTCAGCTGTGGACACAGGTTCTGCCGCGAGTGCTGGCAGATGCACTTTCAAGTGCAGATACAGAACGGCATCTCCTCAGAACTTGAGTGTATGGGTAAAGACTGCAATGTACTCATGCCAGAAGACTTTGTACTGAGTATAGTCACAAATCCGCGACTGCGGGACAAGTACCAGGAATACGGCTTTCGAGACCATGTCAAGAGTCATCCAGAGCTGCGTTTTTGTCCTGGACCAAACTGTCCAGTGGTCATTCGTGCAGCAGTGGATAAAGCCAAGCGGGTCATCTGTGATGAGTGCAACACTTCGTTCTGCTTCCATTGTGGTCTCGAGTACCACGCTCCGACCGGTTGCGAGACCATCAAACGGTGGCTCACAAAATGCGCAGACGATTCAGAAACCGCCAACTATATCAGTGCACATACAAAAGATTGCCCAAAGTGCAATGTGTGTATTGAGAAGAACGGAGGCTGTAATCACATGCAATGTGCCAAGTGTAAACATGACTTCTGCTGGATGTGTCTGGGAGATTGGAAGAATCACGGTAGTGAATATTACGAATGTAGTCGCTACAAAGAGAATCCAAACATTGCCAATGAGTCAGCACACGCCCAGGCACGGGAAGCACTAAAAAAGTACCTCTTTTACTTCGAGCGGTGGGAGAATCACGCCAAGAGTCTCAAGTTGGAGGAGCAAGCAATGAAGAAGATTCGGGCTCGTATTGAGGAGAAGGTGATGGACAGCAGTGGGACATGGATCGACTGGCAGTACCTGTTAGACTCAGCCATGTTACTCAAGAAATGTCGTTACACACTTCAGTATACATATCCCTACGCCTACTACCTGGAGAAGGGGCCAAGGAAGGAATTGTTTGAGTATCAACAGGCGACCTTGGAGGCAGAGGTCGAGAACTTGTCATGGAAGGTTGAGAGGGCGGAGATCACGGACAGAGGGGACTTGGAGAACCAGATGGACATTGCGGAGAAGAGGCGAATAATTCTAGTCAAAGACTTTGATACAGTATGATGCACACTGGCAATGGTGTGCTGAATCCACTTTGGGGGTGCTGTTGTTCCCACTGCGAACTGCTGCTTTACCGCCAACGATTTTCGTCCGGCGCGGCTGTTTCTTCGTTGCAACGTGCCTTCTTTTTCCGGTTTAATTTGTATCGAGTCAGGATTGCCACCTACAAAAGCAGTTCTCATTTTGAGGGTCGGCTGGCATGTTGGATTCAGTATCAAAACTGTGCATCATGTTTCCGCAATTGCCACGTTGACTTGACACATTAACATCGGTTTAGTGTCGACAGACATTGTGCAATAGGTCGATTTGGACCTGTGTTTGTGTTTGAACAGTCATTATACTGCAGGTCAAGCAAATATATCTTGTAATGGCACTATACTTGATACCCTTGGAACCATGTCACCCTCAAGGGGTGGTTACCTCATCATATACCTCTGGACAATTATGCCAAAACAGTTATCATGCTGTTCTTTGTAGTTTTGTGTGTACATTTCGTAGTTTAAAGAAAATTTCAATCAGTACTAAAATAGTCTACCGCAGTTAGCAACTTGAGAGAACAGACATGTAGCAACAAGAGTAAGTTAAAAATTAATATTCTTGTCGCACCTGTCGTAAATGATGCTGATCATTGTCCAGGGGTTGTTCTTGGGGGTATTTATCCTATCGCCAATTTAACTACGCAGACTTGTTTTGTAGTTGTACAGTTTTACTAGGCCAAGAGTTTCAGTTGGTGATCAAGTTTTGTGCTTGTGACATTTGCAGTTGGCTCAAATATTTACAGAATACTTTGAGAAAATAATGTGCTCATATGTGATATGTATGTGTGTGTGTGGATGCATGCATGCCCGTGTGTGAATGCATGCAAGCCCACGTGCATGTACAAACGAGAAGGAAAACGACTCAAAGCGCTATGGGGCGACGATTGCTGTAAATATTTGGTTCATATTGCTGCTTGGCGAACTCACGTCAGCCGAGGTAGACCCAATGTGTCTAGTTCTACACTTGGCCAGGAGATGTCGCCAGTATTACGCTGCAGAAACTTTCTAGGTTAGAATATTCCAATTTTGTTACTAACGTTTGTAGATATGGTATTGTATACTAATTCTGGCAACTTGCCAAGAAGTGGTGAAATTTGGGAGTGGTTTGGAATCGTTTGCCAAAAGATCTTAATATGAAGAATATGTACAGTAAAACTTGTGTGTAGCAGATGGCATTGTTATGAACGGAGGTAATCTGAACTTCAGAAATGTTCCTAAATAATGTAGCAGTCAGGTGGACTGTGGCAGGTTTTACTGTATATATTAAAATTATTTGATAATTGGGGTTTATGCGGAATTGGTTGGTTGAATTGACTAGTAGGTGACTCCGTCATATTTACAAACTTTGTTGTTTCAAGCAAATGATGAGAAATTAATGCATCTTTTTCTACGATTTATTGGATGCAACCTTCCGTCCTGTATTCCTGTACATTTAGTAACTGGAGCAAAACTAACAGTGCACTAAAAAGTGAAATGTTTGCCAATTCATGACTTCACCAAGATAATATGACTTTTCCTAGGTGATGTGCATTTTGTTTTCATTAAATTCCAAAATAAAATTGTTGAGTAATTTTCTTCACGTTAAATTGTATACCATTAGTTGATTCAGCTGATCGTACTGCATAAACCTCAGAGATTATGTGCGACAAAGGTTTTGTTTTTCACGTCCGACATTTCATTTAAGGAATCCGCATCAGTTGTTTGTCTTGTGCATTTACAAAATGAATGATAATAAATTTGTTGTACGACTTGGGACTGGACTTCAGACTTATAACAAATTCTCAATCATTGCATCGATGCACATTCTGCAAGTTTATTTCAACAACACATTTGATGACATTTCCACAACACAACACCTTTGTGTGCAACACTATTTCAAGCAGGACGACTGTTATTCATTTTTAATCTCAATTCGCAATGAAATGTTGAGAGTATACAAAGCAACCCCAGTGCACAAGTGG

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|RBR

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01485	IBR	IBR domain, a half RING-finger domain	Domain	Interproscan
PF19422	Ariadne	Ariadne domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR002867	Domain	IBR domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR031127	Family	E3 ubiquitin ligase RBR family	Interproscan
IPR044066	Domain	TRIAD supradomain	Interproscan
IPR045840	Domain	Ariadne domain	Interproscan
IPR047555	Domain	E3 ubiquitin-protein ligase ARIH2, BRcat domain	Interproscan
IPR047556	Domain	E3 ubiquitin-protein ligase TRIAD1, Rcat domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11685	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000151	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0031624	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0032436	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-