Gene detail

Detailed information of Lsat_s010.g0160.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s010.g0160.t1	P-TYPE CATION-TRANSPORTING ATPASE	Lsat_scaffold010	4787839	4807533	+

Gene Structure

More details in Jbrowse Sequence

CDS

Lsat_s010.g0160.t1

ATGAGAACGACCACGGACAATTTGGCGTTTACAGTCGGAGAGAACCGGGACACGACAATTGACGAAATGAATGAGATGGGCAGCCACAGTAGTTCCCTCAATAGAGCAAGCGAGACAAACGTGTGTCTCGACATCAGGCGAGGAACACCTGGTGAGCCACCTCAGCCAGAACAGCAGACAACATGCCAAGATTCGTCAACCGACATACCCGAAAGAATACATAATCAGAATTGTGGTAACAATTCTCATCAAACATCGAAATCGGACCGCGTGAAGCAGTCGTCACCCAGGGGTTTGGCCAAGGTAGAACATCAGGCTGCAACGGAAGAAGATAGATTAACTGTGGTTAATGTTGACGATATTTCGAATCACGAGCCCAATCGTCAAATCGGTGCCGCAGTTTTGGACTTGAATATGAATTCTGACTGCACGAGGAAGCGGACAGAATCACCACTTGCGGTGAAATGTCACCTGAAGAACGGACATCCTATAGGTAGCTGTGGGAAAACATCATGTGATATTCGCTGCGACAAGCGATATACACATGTATCTAATAATCATAGGCAAACGATATGTACTGTCGAGATACACATCGACGGAATGACATGTGACTCATGCTCCCGGGGCATTGAGATGACTCTATCAGGAAAGAAGGGGGTTAAAAGCATCAATGTGTCACTCGCAAAGAAACTGGCGAGTGTCACTTACGACAAGACACTGACAGCAGCCAAGGATGTATCCGAATGGATAGAGGACATGGGATTTGGAGCAACGCTGTCAATGAACAGTTCCAACGAAGACGAAGAAGCAAAGGGCACCAACGGTAATGTCTGCGTCTTTAACATCACGGGCATGACCTGTCATTCGTGCGCGCGGACTATAGAAGCCAAACTGTCATCCACTGATGGAATTTATGAAGTTTCTGTATCGCTGGAATATAGCAAAGCGACCGTGCATTTTGATCGGCATGATATGAGTCCCACAAAAGTAGTAGACGCAATAGAAGAAATGGGATTCGGGGCGTGCATACTGGCTCAGACAAATGGTGTATCTGACGATACGAATCACACAGGGGAAAGTGGACGCAGAGAAGAATACATGGTAATAACGCCGTGTGAGACAACACAACCAGAGACGGTGGTGGCTGGCATGCCTGTGAAGCCGACTCTGTCTGCTGCTGAAGAGCACGCTACTCTAGGATCATCAAAAGACATTTCAGAACAATTACACAGTAGTTCAAAGACACCAGGCGACCGGCCCAGCGTCGTTGAGTTGACGGCAAGTATGCTGTGCATAATATATCATAATGTCCTGGGGATGGTGTGTGCTTCGTGCGTACATCTGATAGAGTCCAGCCTCAGGAAGACGCGGGGTGTGAAGGACGTATCTGCGGTACTTGCTACTTGCCGGGTGAGAATCACATACGAATCGAAAGCCGCCAGCCCTCTCGACTTCATGGAACACGTCACGTCTCTCGGATTCGAAACTTATCTGGCCGGTACGTCCGCTCCCGAAACAGACATCCTCAGACAGAAGTCAGAGATCAGCAAGTGGCGCCACTCGTTCCAGTTCTCCCTCATCTTCGGCGTCCCAGTGATCGCTATTCGTACGTACTTCATGCTCGCGACAATGGCTTACTCGCACGACCACAGTAGTCAAGGCAACAGCACCGACGTATCCACTACGACCGTTACTATGGTGTTTCCTGGGTTGTCTCTGGAAAACCTGCTGCTCTTTCTGTTTTGCACACCGTGTCAGTGCCTGGGCGGACGGTATTTCTACGTGCAGGCTGGCAAGGCGCTGCGTCACGGAACAAGCAACATGGAGGTACTCATCACGCTGGCAACGAGCGTCGCCTACGTGTATTCAGTGCTTGTCGTTGTCGTTGCCATGGCTACCCGGACGCCGGACAGTCCGGTCAGTTTCTTCGACACGCCGCCCATGCTCCTCGTGTTCGTATCACTCGGCAGGTGGCTCGAACATCTTGCTAAGGCGAAGACATGCGACGCGTTGACAAAGCTAATGAAGCTGCAGCCGACCAAAGCGACACTTGTGCGGATGGACGGAGAAAGCAATGTCGTAAAGGAAGAGGTCATTGAGGCCAACATGGTCAAGACAGGGGATATTCTCAAGGTTCTTCCCGGCAGCCGGATTCCAGTCGACGGCCGGGTGTTGGAAGGACGAACAACCTGCGACGAGTCTCTCATCACGGGCGAGTCGATGCCCGTCAGCAAGCGACCAGGAAGTGACGTCATCGGCGGTGCGATCAACCAGAACGGCACTCTGCTAGTGCGCGCAACGCATGTTGGAAGTGAAAGTGCACTCGCACAGATCGTGAAGCTGGTCCAAGACGCACAGACCTCCAAGGCGCCCATTCAACAGTTGGCAGACAGGATAGCTGGCTATTTCGTGCCTGGGGTCGTTGTATTGTCTCTCCTCACGCTCTCAACGTGGATCATCATCGGCTACGTGGACGTGACTTACATCCAGAAAGACTTTTACGCCCGTGACGAGCGAGATCGCCTTGAAGTGATCCTTGCACACGCCTTCAAACTCGCTATTACTGTGCTGTGTATAGCATGCCCCTGCGCCCTCGGACTGGCCACCCCCACGGCCGTCATGGTCGGCACAGGTGTGGGGGCTAGTAATGGACTGCTCATCAAGGGCGGAGAGCCGCTGGAGACATGTCATAAAATAACCAGCATCGTATTTGACAAAACTGGAACGTTGACAAACGGAGTGGCCAGACTGGCACGCGTCGCCATTATTGTTACTACTACCACAATGCACAACCGTCACAACTACCAATGCACCACCATGAACAACCGTCACAACTACCAATGCACCACCATGAACAACCGTCACAACTACCGATGCACAACCATGAACAACCGTCACAACTACCAATGCACCACCATGAACAATCGTCACAACTACCAATGCACCACCATGCACAACCGTCACAACTACAAACGCACAACCATGAACAACCGTCACAACTACCACTGCACCACCATGCACGATCGTCACAACATCACAACAACCTCTGCACCACCATACACAACCGTCACTACTACCACTGCACCACCATGGACGATCGTCACAACATCACAACAACTTCTGCACCACCATACACAACCGTCACAACTACCAATGCACCACCATGCACTACCGTCACAACTACCACTGCACCACCATGCACGATCGTCACAACATCACAACAACCTCTGCACAACCATGCACAATCTTCACAACTACCATTGCACCACCATGCACAACCGTCACAACTACCACTGCACCACCACGCACAACCGTCACAACTACCACTGCACCACCATGCACAACCGTCACAACTACCACTGCACCACCATGAATAATCGTCACAACTACCACTGCAGCACCATGAACGACCGTCACAACTACCACTGCACCACCATGAACAACCTTCACAACTACCACTGCACCACCATGCACAACCGTCACAACTACCACTGCACCACCATGAACAATCGTCACAACTACCACTGCAGCACCATGAACAACCGTCAGAACTACCACTGCACCACCATGAACAATGGTCACAACTACCACTACACCACCATGCACAACCGTCACAATAACCTCTGCACCACCATGCAAAATCGTCACAACAACCTCTGCATCAGCATGCACAACCGTCACAACAACCACAGCACCACCATGAACAACCGTCACAACAACCACCGCACCACCATGAACAACCGTCACAACAACCACTGCACCACCATGCACAACCGTCACAACAACCTCTGCACCACAATGCACAACCGTCACAACAACCACTGCACCACCATGCACAATCGTCACAACAACCACTGCACCACCATGAACAACCGTCACAATAACCTCTCAACCACCATGCACAACCGTCACAACAACCACTACACCACCATGAACAACCGTCACAACTACCACTGCACCACCATGCACAACCGTCACAACAACCACTGCACCACCATGAACAACTGTCACAAAAACCACTGCACCACCGTCACAACAACCTCTGCACCACAATGCAAAACCGTCACAACAACCAATGCACCACTATGA

Transcript

Lsat_s010.g0160.t1

CGTGGTGCAGGAGTAGATTCAACCGGAGAGCAATCGCCGATCGCTTGTTGATTGCTCGTTGCGCGTGTTGGTGAGAAAGACGGATTGACCCTGCCCGACTGGCGTTCCGCATCACATTGCCTGTTTAGCCAATTTAGATGAAATTGCTCGTAATATTCGTGAATTCATTTGGACAACTTGGGAATACGTGAAGAATATCACCAGCACTTTAGTTGTTATGCTTTTGTTGAATCGGTCCCCATGAGAACGACCACGGACAATTTGGCGTTTACAGTCGGAGAGAACCGGGACACGACAATTGACGAAATGAATGAGATGGGCAGCCACAGTAGTTCCCTCAATAGAGCAAGCGAGACAAACGTGTGTCTCGACATCAGGCGAGGAACACCTGGTGAGCCACCTCAGCCAGAACAGCAGACAACATGCCAAGATTCGTCAACCGACATACCCGAAAGAATACATAATCAGAATTGTGGTAACAATTCTCATCAAACATCGAAATCGGACCGCGTGAAGCAGTCGTCACCCAGGGGTTTGGCCAAGGTAGAACATCAGGCTGCAACGGAAGAAGATAGATTAACTGTGGTTAATGTTGACGATATTTCGAATCACGAGCCCAATCGTCAAATCGGTGCCGCAGTTTTGGACTTGAATATGAATTCTGACTGCACGAGGAAGCGGACAGAATCACCACTTGCGGTGAAATGTCACCTGAAGAACGGACATCCTATAGGTAGCTGTGGGAAAACATCATGTGATATTCGCTGCGACAAGCGATATACACATGTATCTAATAATCATAGGCAAACGATATGTACTGTCGAGATACACATCGACGGAATGACATGTGACTCATGCTCCCGGGGCATTGAGATGACTCTATCAGGAAAGAAGGGGGTTAAAAGCATCAATGTGTCACTCGCAAAGAAACTGGCGAGTGTCACTTACGACAAGACACTGACAGCAGCCAAGGATGTATCCGAATGGATAGAGGACATGGGATTTGGAGCAACGCTGTCAATGAACAGTTCCAACGAAGACGAAGAAGCAAAGGGCACCAACGGTAATGTCTGCGTCTTTAACATCACGGGCATGACCTGTCATTCGTGCGCGCGGACTATAGAAGCCAAACTGTCATCCACTGATGGAATTTATGAAGTTTCTGTATCGCTGGAATATAGCAAAGCGACCGTGCATTTTGATCGGCATGATATGAGTCCCACAAAAGTAGTAGACGCAATAGAAGAAATGGGATTCGGGGCGTGCATACTGGCTCAGACAAATGGTGTATCTGACGATACGAATCACACAGGGGAAAGTGGACGCAGAGAAGAATACATGGTAATAACGCCGTGTGAGACAACACAACCAGAGACGGTGGTGGCTGGCATGCCTGTGAAGCCGACTCTGTCTGCTGCTGAAGAGCACGCTACTCTAGGATCATCAAAAGACATTTCAGAACAATTACACAGTAGTTCAAAGACACCAGGCGACCGGCCCAGCGTCGTTGAGTTGACGGCAAGTATGCTGTGCATAATATATCATAATGTCCTGGGGATGGTGTGTGCTTCGTGCGTACATCTGATAGAGTCCAGCCTCAGGAAGACGCGGGGTGTGAAGGACGTATCTGCGGTACTTGCTACTTGCCGGGTGAGAATCACATACGAATCGAAAGCCGCCAGCCCTCTCGACTTCATGGAACACGTCACGTCTCTCGGATTCGAAACTTATCTGGCCGGTACGTCCGCTCCCGAAACAGACATCCTCAGACAGAAGTCAGAGATCAGCAAGTGGCGCCACTCGTTCCAGTTCTCCCTCATCTTCGGCGTCCCAGTGATCGCTATTCGTACGTACTTCATGCTCGCGACAATGGCTTACTCGCACGACCACAGTAGTCAAGGCAACAGCACCGACGTATCCACTACGACCGTTACTATGGTGTTTCCTGGGTTGTCTCTGGAAAACCTGCTGCTCTTTCTGTTTTGCACACCGTGTCAGTGCCTGGGCGGACGGTATTTCTACGTGCAGGCTGGCAAGGCGCTGCGTCACGGAACAAGCAACATGGAGGTACTCATCACGCTGGCAACGAGCGTCGCCTACGTGTATTCAGTGCTTGTCGTTGTCGTTGCCATGGCTACCCGGACGCCGGACAGTCCGGTCAGTTTCTTCGACACGCCGCCCATGCTCCTCGTGTTCGTATCACTCGGCAGGTGGCTCGAACATCTTGCTAAGGCGAAGACATGCGACGCGTTGACAAAGCTAATGAAGCTGCAGCCGACCAAAGCGACACTTGTGCGGATGGACGGAGAAAGCAATGTCGTAAAGGAAGAGGTCATTGAGGCCAACATGGTCAAGACAGGGGATATTCTCAAGGTTCTTCCCGGCAGCCGGATTCCAGTCGACGGCCGGGTGTTGGAAGGACGAACAACCTGCGACGAGTCTCTCATCACGGGCGAGTCGATGCCCGTCAGCAAGCGACCAGGAAGTGACGTCATCGGCGGTGCGATCAACCAGAACGGCACTCTGCTAGTGCGCGCAACGCATGTTGGAAGTGAAAGTGCACTCGCACAGATCGTGAAGCTGGTCCAAGACGCACAGACCTCCAAGGCGCCCATTCAACAGTTGGCAGACAGGATAGCTGGCTATTTCGTGCCTGGGGTCGTTGTATTGTCTCTCCTCACGCTCTCAACGTGGATCATCATCGGCTACGTGGACGTGACTTACATCCAGAAAGACTTTTACGCCCGTGACGAGCGAGATCGCCTTGAAGTGATCCTTGCACACGCCTTCAAACTCGCTATTACTGTGCTGTGTATAGCATGCCCCTGCGCCCTCGGACTGGCCACCCCCACGGCCGTCATGGTCGGCACAGGTGTGGGGGCTAGTAATGGACTGCTCATCAAGGGCGGAGAGCCGCTGGAGACATGTCATAAAATAACCAGCATCGTATTTGACAAAACTGGAACGTTGACAAACGGAGTGGCCAGACTGGCACGCGTCGCCATTATTGTTACTACTACCACAATGCACAACCGTCACAACTACCAATGCACCACCATGAACAACCGTCACAACTACCAATGCACCACCATGAACAACCGTCACAACTACCGATGCACAACCATGAACAACCGTCACAACTACCAATGCACCACCATGAACAATCGTCACAACTACCAATGCACCACCATGCACAACCGTCACAACTACAAACGCACAACCATGAACAACCGTCACAACTACCACTGCACCACCATGCACGATCGTCACAACATCACAACAACCTCTGCACCACCATACACAACCGTCACTACTACCACTGCACCACCATGGACGATCGTCACAACATCACAACAACTTCTGCACCACCATACACAACCGTCACAACTACCAATGCACCACCATGCACTACCGTCACAACTACCACTGCACCACCATGCACGATCGTCACAACATCACAACAACCTCTGCACAACCATGCACAATCTTCACAACTACCATTGCACCACCATGCACAACCGTCACAACTACCACTGCACCACCACGCACAACCGTCACAACTACCACTGCACCACCATGCACAACCGTCACAACTACCACTGCACCACCATGAATAATCGTCACAACTACCACTGCAGCACCATGAACGACCGTCACAACTACCACTGCACCACCATGAACAACCTTCACAACTACCACTGCACCACCATGCACAACCGTCACAACTACCACTGCACCACCATGAACAATCGTCACAACTACCACTGCAGCACCATGAACAACCGTCAGAACTACCACTGCACCACCATGAACAATGGTCACAACTACCACTACACCACCATGCACAACCGTCACAATAACCTCTGCACCACCATGCAAAATCGTCACAACAACCTCTGCATCAGCATGCACAACCGTCACAACAACCACAGCACCACCATGAACAACCGTCACAACAACCACCGCACCACCATGAACAACCGTCACAACAACCACTGCACCACCATGCACAACCGTCACAACAACCTCTGCACCACAATGCACAACCGTCACAACAACCACTGCACCACCATGCACAATCGTCACAACAACCACTGCACCACCATGAACAACCGTCACAATAACCTCTCAACCACCATGCACAACCGTCACAACAACCACTACACCACCATGAACAACCGTCACAACTACCACTGCACCACCATGCACAACCGTCACAACAACCACTGCACCACCATGAACAACTGTCACAAAAACCACTGCACCACCGTCACAACAACCTCTGCACCACAATGCAAAACCGTCACAACAACCAATGCACCACTATGAACAACCGTCACAACAACCTCTGCACCACCATGAACAACCGTCACAACATC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00122	E1-E2_ATPase	E1-E2 ATPase	Family	Interproscan
PF00403	HMA	Heavy-metal-associated domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001757	Family	P-type ATPase	Interproscan
IPR006121	Domain	Heavy metal-associated domain, HMA	Interproscan
IPR006122	Domain	Heavy metal-associated domain, copper ion-binding	Interproscan
IPR008250	Homologous_superfamily	P-type ATPase, A domain superfamily	Interproscan
IPR017969	Conserved_site	Heavy-metal-associated, conserved site	Interproscan
IPR018303	PTM	P-type ATPase, phosphorylation site	Interproscan
IPR023214	Homologous_superfamily	HAD superfamily	Interproscan
IPR023298	Homologous_superfamily	P-type ATPase, transmembrane domain superfamily	Interproscan
IPR036163	Homologous_superfamily	Heavy metal-associated domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46594	P-TYPE CATION-TRANSPORTING ATPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005215	Molecular Function	transporter activity	Interproscan
GO:0005507	Molecular Function	copper ion binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-