Gene detail

Detailed information of Lsat_s008.g0427.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s008.g0427.t1	AP ENDONUCLEASE	Lsat_scaffold008	10190697	10200125	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s008.g0427.t1

ATTTCAGCTGCTGCCTCGTCATACGGTTCGGATCCATGATCTTTCAGAAAGTAGCGAAATCAGAAGTAGTTTTCGTGTGGTAAAAACAACACGAAAATCAAACCAAAACGAAATGGCGCCGGTTAACCTTTGAACCTAGTTTAATGGCACAACCAATCGGAATAAATGAATTTCGTTTCCGCGGCCACCTGCTACATTTAATGTGGAGTGTTCCACAACATGAACATATTGACGTGGAATATCAATGGTATCCGAGCGACCAAAGTTCCCCTTAAAAAGCTATTTGATAGGCTGGACGCTGATATTATATGTCTCCAAGAAACTAAGGTCACAAGAGATCAGTTAGATGAGCTGTCTGCCATCGTTGAAGGTTACAATTCATACTTCAGCTTCTCTAAAGTAAGGAGTGGATACTCAGGAGTAGCAACATTTGTGAAGGACTCGGCGACCCCAATCAAGGCCGAAGAAGGGCTGGCTGGGATCCTAGGGAGCAGCGATGATACGCAAGTTGGTTGCTATGGTGACCATTCTGGTTTTATCACAGAGGAGTTGAACGCCTTGGACCGAGAAGGTCGGACAATGATCACGCAACATCGCATTCTAACTGCAGATGGAGAGCCAATGATAATGACGGTCATCAATGTGTATTGTCCGCGTGCTGACCCTGACAACGGGGAACGTCTGGCGTACAAACTCAACTTCTACCGTCTGCTGCAGCTGAGGTCTGAGGCATTACTACCTCACAGTCACGTGGTCATCGTGGGAGACATGAACACGTCACACAAGCGGATTGATCACTGTGACCCAGATCCTGCGATGGAGTTTGAGAGAAACCCCGGCAGACTGTGGCTGTCAGAGTTCCTGGCGGGAGACGTTGGCGAGATTGGTCGGAAGCCGCCTTCAGAAGACGAGGTGCTGCACAACGGAGGCGGCATGTTAGCGAAGTTCATCGATACGTTTCGTTACTTCCACCCGTGCCAACGAGACGCGTACACATGCTGGAGAACGACATCTGGTGCGAGAGCGACGAACTACGGCACGCGAATTGATTACATATTTGCCGATCGTCCCCTCGCAACAACTGCCTTCACGGACTGTGTGATCAGGCCGGACGTCGACGGGTCGGACCACTGTCCGGTGACCGCCACGCTCGACATCGCGTGTGTACCGTCCAGCAGGTGTCCGAAACTGTGCACCAGGCACATGCCAGAATTTGCGGGTAGACAGCAAAAACTATTGACGTTCTTCCCGAAGACAGCGCCGACGGGGTGCGCTACGATAAACAGGAAATGTGAAGGTAGTGGCTTGGACGACGGGAGTAGCTTACCGACTTCTGAGGAAGATCACGCGTCCAGTAGTAGCAGCCAGGGCGCATCGGATCCCGACGCGTCAATGATACCGTCAGTACTAGACACCCGTCCAGTCGCAAGTAACGCGAACAGACGGTGCTTGTCCACTGGGGTAAAAAGGAAAGCTGCCACTAACAGAAAGAACCATGGTCAGGTAAAACAAGGAAACTTGTTGAGTTTCTTCCACAGACCCGCCGATAGACAACCAGAAGCGTGTTCGGACCTTAGCACGGCGATACCCGGCTTTAATGTAAATGTTTCTAACAAGCAAAACACTGCTAGCTCTGTCAATAAAGTCGACTCACATTCGTGTTTAAAAATTATCATGAATGATGCCGCAGAACTTTCAGATAATCAGCAAACGGTTGACAAAAAAGTCGCCCAACTACGAGACTGTCGTTCTTCAACGCCCACGTGGAAACATTTATTGTCGGGACCACCAGTGGCGCCACTGTGCCGGGGCCACAAGGAGGCATGCGTACTGAGGACTGTGAAAAAAGATGGTCCGAATAAGGGTCGACAGTTTTGGGTTTGTGCCAGACCAGAGGGCCACAGAACTAACCGTGCTGCTAGTTGTGAACATTTTGAGTGGATTGCCAAGAAACGCTGACGTCGTTGGTCATGCGAGTCACCAGCGTAAATGCATTTACTGCTGTCGAAGCGCTGCAAGAGGTAAGAAGGTAGACGACTTACCTTCTTGAATTAATGCCGCAAAAATAATGTTTAGTTATATTTATTTTATCCTGCCAAATAATGTCCACGACGTTTGCTTTGCCAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF06839	zf-GRF	GRF zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004808	Family	AP endonuclease 1	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR010666	Domain	Zinc finger, GRF-type	Interproscan
IPR020847	Binding_site	AP endonuclease 1, binding site	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22748	AP ENDONUCLEASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0003906	Molecular Function	DNA-(apurinic or apyrimidinic site) endonuclease activity	Interproscan
GO:0004518	Molecular Function	nuclease activity	Interproscan
GO:0004519	Molecular Function	endonuclease activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006284	Biological Process	base-excision repair	Interproscan
GO:0008081	Molecular Function	phosphoric diester hydrolase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0008311	Molecular Function	double-stranded DNA 3'-5' DNA exonuclease activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-