Gene detail

Detailed information of Lsat_s007.g0397.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s007.g0397.t1	TOLL-LIKE RECEPTOR 7-RELATED	Lsat_scaffold007	8540907	8546951	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s007.g0397.t1

GAGAAACGAGAGAAGGTCAGCGCGAGCAGAACCGTCGGAACGCACACGAACGTATCTACCTTGATTCGACAACGTATTTAGATCATGGCAGCAGGTCGACAGACGACGAAGATGACTGGCACTATGGGTCGCGTTATCGTTTACATCCTCGTCTTCCAAACTGTCAGCTTCCCTGCATGGAATCACCCCTGCATAGAGTCGGAAGTGACAATTGATGGTCATCTTGAAACGACGGTGGATTGCAAAGACGTGCAGTTGTCAACGATTCCTGTATTTCCTGAAGAAACAACACATCTCCTACTCAGGATAAATATCAATGGACAACGTTCGGCACCAAAACCACACAGGCCGTCTTCAACACACGAACTACTTCCACAAAAGACAGACAATGACAAGGTCAATCACGTGTACATCCCTCCGTCCATTCAAATTATCCGCAGAGTGCACGTAAAACTCCCAACTAAACGAAATGTTGAAGGGCATCTTATTTTCAACGCTGATAACAACGTCCGACATATCAACATGTCTTACACGTCCACTCCCCTGTTCATGTCTGGTTCAGTCATTGGTCTGAATCAATTAGAAACTCTCGATGCAAGTCACTGCGACCTAATCAGAATAAAGTTACAATTCGGGCATTTCCCGAATTTAAAGAATCTCAACATTTCACATAATCAGTTTGACACAGTCCCGGGAAAACTGTGGAATAGTTCTCCAAAATTGGAAGATTTTGACATGTCGCATAACCAATTGAGAAACATTGATCCGGTTACCTTCACGTCCTGCGAACGTCTGAAACACATCAAACTCGGGGGGAATTCACCGCGTGAGCTGTATCTTCAACTTAGCAGGCTTGCCAACCTAGAAACTCTAAGTCTAAATGACAATAAACTGTTGACTTTATCAAGAAAATTTACTGCTGAAATTGACAACTTGTTTCGGGTGAAAACATTCACGTTGGACATTCGAAACAACAACTTCGTCTGCTCTTGCGACACGCTACCGTTTATTCGCTGGATCCAGACAACGGAAGTTCACCTGGTGGCGAAAAACGAACTAGTATGTGTTGTGGGTAAAAGAAGAATGCAAATAGTCTACGTATCATTGGTAGAACTCACCGAAGAGTGTAGTAGTATACTTCACATCATCATCATCGGCATCGTTGTCGTCGTTTTCGCTTTATTTGCGATTGTGGCGGTTTTAGTGTGGAACAAATGGTACATAAAATATCGTATAATTTTATGCAGTTTATACGTGCGGAGAAAGCAGCGCACGGAGTCCAGTGAACGCTACGACGCCACTGTGCTGTATTTTGCGTATCCCACCAAAGAAGAGGATTACCCGGCCAACAAGGCGATTACTCGCTGGGTCGTCAGTCGTCTACTTCCTGTCGCCGAACAGGAGGAAGGCCTGCGGCTGTTTATCGATGACCGAGATGGCATCGCTATATCTAAGGCTGATCTATTTATTTCTTCTTTTGAAAATTCGGACAAACTTATTTGTCTGTGTGAGTCATCACTTAATCGGCTCGTTCACTGAGGTCTTTATGAAAGCCAGATCCGTACGAGTCGTATGATTGGTAACAATTCTGTTGGTTGTAGCTATAACTATAGACGGACAACAGTTGTTCATTCTGAGGACTTGATAGTTGTGATATTGCTTAATCCTGGTTCTTGAAAATGTCATCTTATTCACGACGTCCAAGTGTACTAAGTATACTTGCGGAACACTTGCTTGTAAACACGGCTGTGTGTTCTTAGAAAGGTTAGTTGTTAGATTGTTGCAAGATGTAACTGATATATGTTGTTCTCTTCCTGGTTTAGCAGCGAGTAAAACACAGCAATAATGTTTTAAATAAGCTGAGTATTGACAGTTTTCAAGTTAAATATATTTTATTAACTGATTAACTGGTGATAAAAGTTAAATATATAGCAAGGGTGATACATTTGCATTAGTATTATAATAACGTATTTTTAAGTATCACATG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR035897	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47410	TOLL-LIKE RECEPTOR 7-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0002224	Biological Process	toll-like receptor signaling pathway	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007249	Biological Process	canonical NF-kappaB signal transduction	Interproscan
GO:0032755	Biological Process	positive regulation of interleukin-6 production	Interproscan
GO:0038187	Molecular Function	pattern recognition receptor activity	Interproscan
GO:0051607	Biological Process	defense response to virus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-