Gene detail

Detailed information of Lsat_s006.g0608.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s006.g0608.t1	POLYCOMB GROUP PROTEIN PC	Lsat_scaffold006	15968572	15975590	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s006.g0608.t1

TTGACAGGCGCGAGTGACGTCACGCGCCTTATTATGGACTGCAGTGTTGTTTCCCGGCCGCGAGCGTTGCAAAGCACGCATTTAGTGGTGGCGTAACGCACAAAGCTCGGCGTGAAAATGATGGAACTATCGGACGTCGGCGAGCGAGTTTTCGCCGCCGAATGCATCCAGAAACGTCGCATCCGAAAGGGCAAGGCGGAGTATCTGGTCAAATGGAAGGGCTGGAGTCGCAAATACAATACGTGGGAACCGGAGGAAAACATTCTCGACCAGCGCCTATTGGAGGCATTTCGACGCAGCCACGGAAGAACATACTCTGGCCTCAAGAGGGGACCGAAGCCGAAAAAATTCCGCCTTGAGGCGGCCCGGCGAGCGGCCAAAAGCTGCCCAGTGAAGTCTGAGGACGAAGACGACCTAAGTACGGCCGAGGAAGGCAGCACGACGTCGTACACGACCGCCACCAGCGACACCGACGACAAGGACCCGGATGATGACGTCAGAAAACAGAAATTGCAGCCTTCCAAGTCATTTCACCCAAAGGGCGTCGGCGGCGGCGACGATGGTCTCGCTCTGGCCGCCGAGTCGGCCATTCCGCGTCGCATGAATGTGCGCATGCGCGGGTCACGTGGCCGCCCGAGATCGGCGCACCGGTTGAAGATCCGCTTCCAGTCGCGGCCGCGGGGTCGGGCACGCGGACCGGGACGTCCGAGAGGTGTCCGGTCGGGCCGACCTCGCGGGCGACCCCCGCTCAAGGGGCGGCTGTTCCTCGCCGGCGACGACGCGGTAAGTCGCCTCGATATGGCGGTCGCAGTGACGAAGAACGGCGGTACTTCGGTGCGTCGGCTCGGCTCGCGAGCTGGGCGTGGCGGGGGCCGCGTGGGGCTGTCATCAGGACGCCAGCACAGACCCGCGGACAGCGGCAACGACGTCAAACGTGAGACGGTCGACACTCCAACAGTGACGCCAGCGGAGTCTCCCCCAGTGCCAGACACGGCGGAGACGTCGAAGAAAGAATCAGACGACGCCGGAAATGACCAACCCGGATGTAACGGCGACGGACAGACAGACAGCGCGACCAACGGCCGCGTCCCAGACGCCGTGTCGACCACACTGTCCGAGAGCAGCGACCGGGAGCCGGAGACGTCGGCGACAGACACGAGAACGTTCTGGCGTCCGCCCGAGGAGGCGAGGCCCATCCTCGACCAGGTGTTCATTACGGACGTGACGGCCAACCGCGTGACGGTGACGGTGCGGGAGAGTCACACAGACACGGGCTTCTTCAGGAAGCGCGAGGTCGAAAATTGAACGAAGTTCACGTTGACGTGTTCTGGGGAGGTGGGGGGGGGGAACCCAGCGAGGACAGAGATCTTGTAGCGCCGAGAGAATGTTAAAGACGGAACAGCGAAAGGGAAATATGAATCACCTACATTCATTTTCTTGCCGAAAATGTGTTGCATGTTTTGACGCGCGGTGATTGTAAAACTACATTCCGGTGTTCCATCTGACGATATTCCATGCGGCTACCCAGTTTATGTACATGCCAAGACGTGTTGACATCGCTGAAACAGGCGCGGTATATCGTACCGCCAGTGTTTATATAAAAGCTGGATATCAACATGTACAGTGGCTTCTCGGGCCCGGTGAAACCAATATAAGAATATCAGAGCTGGATTTATTCGGCGATTCTGGACTAGCGTTCACACTGGATATGCGATTGATGTGACAAATCGCGCAAACTCCAACTAACCACAGTCGTCAACAAGCATCGCACGCCGCCTGTTTGTCGCATCGGAGGCGTGCGTGTACTGCGGAGTCTTAAACGGGACACACGGAGGAATACAACTACTATGAAATAATAGGGAATGCGTTCTTTATGTGCGCTGTAGCTTACGACGAACACACGAGTCATCGCCCGCTTAGTTATGGATGTTGTCTGTCATGAAGCTCGGTCGTATTGTCAGTCGGGTTTCTTGTTATTTGGTGACTGGCCGTAGGCGGTAATCGGCCATTTGTAGTCAGGATTACCGGTGGATGACGAGCATTGTGACGCACGGCAGAGATTATGTTCTTGGTGTCTATGAAAGAGACATTGCACACCTACCATTATATTACTCTTGTGGTGTTTATTTATGATAACACGTCTGTCCGTTGCCGGAACATATT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00385	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan
PF17218	CBX7_C	CBX family C-terminal motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000953	Domain	Chromo/chromo shadow domain	Interproscan
IPR016197	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR023779	Conserved_site	Chromo domain, conserved site	Interproscan
IPR023780	Domain	Chromo domain	Interproscan
IPR033773	Conserved_site	CBX family C-terminal motif	Interproscan
IPR052458	Family	Polycomb group PRC1-like complex component	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46389	POLYCOMB GROUP PROTEIN PC	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000785	Cellular Component	chromatin	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0035064	Molecular Function	methylated histone binding	Interproscan
GO:0035102	Cellular Component	PRC1 complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-