Gene detail

Detailed information of Lsat_s005.g0495.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s005.g0495.t1	EPIDERMAL GROWTH FACTOR RECEPTOR KINASE SUBSTRATE EPS8-RELATED PROTEIN	Lsat_scaffold005	12913005	12941619	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s005.g0495.t1

ATGGCCGCAGAGAGGCACCACCTATGGGCCCCAGGGACAACTACAATGTTGGACCAATCGATTTCGTGCCGTCAGAGAGACACAAGTATGTGTTGGATCACCTGGCCACTTTCACCGTTGGAAAACAAGACCTGCTGTACCCGGAGGATGGCATGCGCAAGTTGCGACAGATGGAGATGACCACAGGTGTGTGGACAATGCAAGTGACCATGCAGGTGGAATCCCGTGACCTGGTCATCACTGACCGGCAGACAGAGGAAGAGATGGAACGCTTCCCACTCAGTCTCATCAGTGATCCAACAGCGATCGTCAACGAAGACAGACGTGACGTCTACAACAACATTCTTCTGTTCACAATCATGGGAGATAATTACCAGCGCACACCATCCGAGATGCACATATTCCAGTGCAAGTCCATATCTGCCCAGAACATTGTGGAAGACCTTAGGGCTGCCATTCATGCCAGAAGTCGAAGTGGCAGTGATGGTGGCCGCCGACGCCCCAGCGGTCCTGGACCCGCCCCGGCCGGTCGCATGTCTCCCTATGGACCCCCCGCTGAAATGCCCTCCCAATGGCAAGAGTATGAGAGGGCCGCAGAAAGATCGGCCATGGCAACTGCTGCCTACATGCCAGGCCCTAGTGCGGGTGCTGCGTTCCGCCAGTCGTTCCGCCCTCCACCGATGGAGGAGCATGTGATGACAGAGAGCGTTGACAGAGACGTCCAACTTCTCAACCACTGCTTTGATGACATAGAGAAGATTGTGGGACGCCTACAGTACGCAGCTGAGGCCTTCAGGGAGCTGGACCGTCGACGGGAGGGACGTGACCGCAGGAGAGGAATGGGAGACGGCATGCTGACCATGAGGGCCCGACCTCCCCCCGCCAAAGACTTCATTGACATCTTCCAGAAGTTCAAGCTCGCATTCAATCTGCTCGCCAAGTTGAGGAAGCACATCCATGACCCGAACGCCCCCGAGCTGGTCCACTTCCTCATTACCCCCCTCAGCCTCATTGTGGAGGCATCCAAGGACCCCGGCCATGGCACCCCTGACCTTGCTTCTAAGGTCGTGTCACCACTGTTGACAGCTGAGGCGAAGGAGCTGCTCAAGAACTGTTTGACGTCCAAGGAGTCCGACCTGTGGGTATCACTCGGTGATGCCTGGACTGTCAGCAGAGATCAGTGGAAGGGGTATGTGCCCCCATACACGCCCAAATTCACAGATGGTTGGAACCCCGAGCCCGGCTGGTTCACAGACTCCTCACAAGATGTCGTCACTGCTGCCATCATCGCCCATCAACAGAACCGTGACGATGATGATAGGATCAAGTTCACAGTGGATGATCCATACGCACGAAGGGGGGTACGCACCCCGCCCCCAGTGACCCGCAATGAGAGAGAAGATCCATATGCTCGAAGGGGGGTACGCACCCCGCCTCCAGTGACTCGCAATGACAGAGAGGATCCATATGCTAGAAGGGGGGTACGAACTCCGCCCCCAGCAAGCCGCCCATTTGATGACCCATATGCCCACAGTGGTATGATACAGAGGCCACGGTCTCCACCCCCTGCAGCAGTGATGGGCATGCGCAGAGATGTCGACCCCACATACGCAGGATTCCAGAAGCGCCAGCAGCCTGTCCAAATGGAAGAGCCCAATCGCGCTCCCCCAGGGTTCATTCAGGACCAACATGCCTTCCGCAGCGAACTGCTGCAGAAAGGAGAAAAGGTCGTTGAAGTGATGCATGAACGCGAGGGACGCAACCCGAGGGAACTGAGTGTGCAGAAGGGCGAAATTCTTGAGGTCCTTGACGAGAGTCGTAACTGGTGGAAACTACGCAACAGTAAGGGGGAGATAGGCCACGCCCCATACACAATCCTCAGTGACCTTGATGGCGAAGCGGTACGTCCGTAGAGGGAGGGTGGACTGGTGCCGCCACCTATCAGCAGGCTGTACCCGACTCCTCTAATGCATGTTACGATGTTTCACTGTATATTTGCTTGTTTCTTGCACTGTTTGGTTGTCCGGACATAGCAGTTAACGTTTCTGTTCGGTAACTGCATGGTTCCACGAGTGATATTCTGGGTTGGTGAAATTAACACGACATGGCTGCTGTGTACAATGGACTGTTGTTCTTCACATAACCATCTTGTTACTTGCCAGCATTCTCTGATGCATGTGTCTCTACTTGCCTACCTTGGCCAAAGGTGAAGTCACTGTAAGATATTCCACATTTTCTGTACTTTGTGTTTTAACAGTTGGGAACTGTAGCACTAGTTTGTTGGGAATCTGTGAGAAGGTTTTGTAACAACAAGTCTGTTGCTGCTACTTTATGCTGGTTATAATGATGTAGTTGCCTCAAGTAAGTTGTAGAATAATGTGAATATTTTGAGTAAGTTGTAGAATAATGTGAATATTTTGAGTGCAGAATGTTGAGAGATGATGTAACATGGTCACAACCAGAGAAATCATCTGCATGTATATAGACAATTACATATACACCAGGTTATATATAAGATCACATAATTGGATGTGTTGTGTTAATGTACCACAAATTATATTTGTGAAACAACATTGTATCAACAATAGGAGTGCACAACTTGCCAAAATTAATGGTAATTTTATAACTAGAGAAGAATGTTTCAAACTTGACATGAATATTGTAGAGCGGCCATGGTTTGGGGTTGCCCAAAAAAGGTGGCAGTCGCTATGACAGAAAACCCTGCACCGCAGTCGCTGCTGCCGTGCCAAGGTCAAAAGCCCAGTTTTCAAGGGCATCAGTTCCATCTCATGCAACTGTGCAAATGTCTCGTGAACAGAGGCCACATTCGAGTCACCAACACCGAGGTGACTATCGTCACAATTAGGGTATTTTGTGGCGCATGGTTATTTTGGCTTGATGGGTTGTTGCAGGTCGTGTTGTGAGTTTCTGCGGTGCTCTACTGTGGCTATCACTGTCATTATATATGTTGTGATGATGTCAATTGTTGTTGCTTCTTATTTGGTTTTCGAAAAGTTTTGAGTGGGTGATTGTGTTGCTTTTGTTCTGGGGCAGATTTTGGTGTTGTGTTGGAAGGGAATTCCTGTGTTGCATTCCATGTTGTTTAGCATTCACCAGTCTTTAACATTCCTCACAAAGCTGCCAAATGTGCAGCAGGAGAAATGTACACATGTTGTGCTTTGAGCAAGTTTGTTTCTTTCTTTCTTTTCGCTCCCACCTTTCTACGTTGACGTACGCTGGGTCAGTCAATTACGTCTCTCCAGGTGACTTCTTCTTGGACCCTGATTAACTTTACATAGCATCCATCCATCCATCCTGGTTTCCAGTAAACCTATAATTAAAGGAAGCTGAGTTATGATGTAACATTGGAATGCAGAATAAATATTTCTATGATGTCTGTGAATATCAAACATTCTAGCGTTTTAGTAAGAAAATATATTTTAGGCAACTTTTTATAGACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018	SH3_1	SH3 domain	Domain	Interproscan
PF08416	PTB	Phosphotyrosine-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452	Domain	SH3 domain	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR013625	Domain	Tensin/EPS8 phosphotyrosine-binding domain	Interproscan
IPR033928	Domain	Epidermal growth factor receptor kinase substrate, phosphotyrosine-binding domain	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR039801	Family	Epidermal growth factor receptor kinase substrate 8-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12287	EPIDERMAL GROWTH FACTOR RECEPTOR KINASE SUBSTRATE EPS8-RELATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003779	Molecular Function	actin binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007266	Biological Process	Rho protein signal transduction	Interproscan
GO:0035023	Biological Process	regulation of Rho protein signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-