| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Lsat_s004.g0593.t1 | VPRBP PROTEIN-RELATED | Lsat_scaffold004 | 16034808 | 16084872 | + |
| CDS | |||||
| Lsat_s004.g0593.t1 | |||||
| Transcript |
| Lsat_s004.g0593.t1 |
| Protein |
| Lsat_s004.g0593.t1 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | UBD|Other|Beta-prp |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006594 | Conserved_site | LIS1 homology motif | Interproscan |
| IPR011047 | Homologous_superfamily | Quinoprotein alcohol dehydrogenase-like superfamily | Interproscan |
| IPR015943 | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR016024 | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR033270 | Family | VPRBP/DCAF1 family | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13129 | VPRBP PROTEIN-RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0016567 | Biological Process | protein ubiquitination | Interproscan |
| GO:0080008 | Cellular Component | Cul4-RING E3 ubiquitin ligase complex | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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