Gene detail

Detailed information of Lsat_s004.g0289.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s004.g0289.t1	CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE	Lsat_scaffold004	7292283	7340227	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s004.g0289.t1

GTCACTTCCTGTGTTGTCCCCTCCACATACACACGTTGTCGAAGTGTCAGGTTGCGCATTTCCAACGTCCAAAGTACTGCAGGTGTTCTGTGTACGATAAAGAAGAGTCATGAAGGCCCTGAAGTGTCCATTTCTCACCCGAATCCCAATCGGTCAAGTGAGGCAGCATGCATCTGAGCTGCTCACCTTCGCTGACCACTGTCCAGTGATGGGTCATGTGATGCGCTACTCGGTCCTTGCGAGCGGCGAGACTCCCGTGATGCAAGAGCAAGGGAACATGAAGCAGTGTCCATTCCTGTCGACCAAGCTCAATACGCGGGAAGTGCATAGTGACGTCATTGATTTGGCTGCGGCAGCTGAGGTCTCCATCCAAGCAAAGTCCTCAATGCACACGGCGCCCCCGAAGTTGCAGAAGGTCGCAGAGAATGCTGTTGAGACCAATAACAACAACAACGCGGCCGGAGACTTTGCTGCTGAAAAGGTTCAGAGTTTTGCGACGATGGCGAGAAAACAACATGTCCAGTCGACTTCTCCATTGAAGGACTTTGTCCCATCTGAGGGTGATGAATCCACCGATGAGTCCCCCCGCAAGGCCATCTTCAACTACGAGGAGTTCTTCAACGGGCAGATAGAGAAGAAGAAACAGGATCACTCGTACCGCATCTTCCGCAAAGTGAGCCGCAATGCAACAACGTTCCCAATGGCGACAGAATGCAGCGGAAGCAACAAGAAGATCTCCATATGGTGCAGCAACGACTACTTGGGCATGAGCTGGCACCCCAAAGTGCAGGCTGCTGTCATGGAGGCACTGCATAAGCACGGTGCTGGGGCGGGTGGCACTCGCAACATCTCTGGCAACTCGCCTTACCACGAGGAGCTGGAACGAGAGATCGCTGACCTCCACCAGAAGGAGGGTGCGCTACTCTTCAGCTCTTGCTACGTGGCTAACGACTCTACCCTCTACACCCTCGCCAAGATGTTGCCTGGTTGTGAGATCTTCTCTGATGCTGGCAATCACGCGTCTATGATCATGGGCATCCGCAACAGCGGTCGAAACAAGCACATCTTCCGTCATAATGATCCGAAACATCTGGAGGAGCAGTTGAGCAAGATGGATGTCTCTGTGCCGAAGATTGTTGCCTTCGAGACCGTTCACTCCATGACAGGTGCGGTGTGCCCCCTGGAGGAACTTTGCGACATCGCGCACAAGTATGGGGCTCTCACCTTCGTCGATGAGGTGCATGCCGTCGGGCTATACGGAGAACACGGAGCTGGCATCGGGGAGCGGGATGGCTTGTTGCACCAGATGGACATCATCTCCGGCACCCTGGGCAAGGCATTTGGAAACATTGGTGGATATGTGACTGGGTCGGCGAAACTCATGGACATGATGCGTAGCTATGCCTCTGGATTCATCTTCACGACTTCTCTGCCTCCTACTGTCTTGTATGGAGCTACTGCCTCTATCAGAGTGTTGAAGGGGGAGGAAGGGCGACAGCTCCGAGCCACGCATCAGGACAATGTGAAGTACCTTCGCAGTCGCCTCATGGATGCTGGTCTACCGGTCATCCAGTGTCCATCCCACATCATTCCAGTACATGTTGGAGACCCAATCCTGGTGGTGAAGCTTGCCAACCACCTCATGGACAACCATGGCATCTACATCCAGCCAATCAACTATCCGACGGTGCCACGTGGCGAGGAACTCCTGCGCATTGCTCCGACTCCGCATCACAATCGCGACATGATGAATTACTTCATCAACGCCATGATGTCCACATGGCTCGAGCACGGTCAGGAGCTGAAGGCACACAGTGCCATTGAGTGTGATGTATGCAAGCAGATCCTGCGCTTCGAGGCGTTCTCGTCCCAGAGTCTGCCCCCGTGTGATGGCAGTCAGTGCGATAAGTATCAGCTCCGCACTGCCGCTGCCTGAGCGTGATGAGTAATCCCACGATCACCGACCAATCATGAACAACTGACCAACTGACCAACTGCAGAATGCAATGTCTCAACAAATTTATTTCAAAAAGATATTTTGATAGTCTAGAGCTTTCTCGTGTAGTCTTGGAATAGGTTTTAAACAGGTCATTATTTGTTAAAATTAGTAGTGTTTGAGTGAGCAGTTTGATACACTGGTGCTCTTTCTTTCTCTTGCTATGTGCTGGTATTCACCAGTCACATAAATATGTACTTCACGTCTTAAAGTGGTACTGGTAACAGAAACATATGCTGTTTTTTAAAGCAAATGCCCTGTGGTACCAACATTTGAATTATTCTAGAACTTTGCACAAAGATGTACAATCGGTACATGCCATTTGTGAAAATCTGCCAATTACAACTTCTAGTAGTGTGCACCAATGTATCAAATTACAATGTTATTGTTCAGCGCCATTTACAAAACGATTATCTGTTTTGTATAAATTTAAGAAGTAATTCACACCATGTGTACTTTTTAGAATGCGCTTTTCCCAAAAATTTGCTGCGAAAAATATAACCATAATTAAGTTACAATAGTAGTTATTAAGTAGTTACGTTTATGTGAAAAAAGTGGATAAAGAATCCAGATTAAGAAATTCTAGTTTTCCACAGGATGTCTAATAGAAGTATCCTCAGCTGCATATTTTTTCAACTAGTGATGTGTTCATAAAATTAAACAAATTATTTTCATGTGAAACGATTTGTGTATCATTCCAGAGTTTCTAATTGTTAGTTGATAAGACCAAAATACTGAAATAAAATTTTTAGCTGCGCTAAATCGAAGATGGATTTTTGTTGTACATTTCTTTTAGTATTGTGGAGAGCTCTCTACGTCACAAGTTACTGCTTTCCCTGCAAGATGACAATATTACAAATATAGGTGTTTAATGCTGTGCAGGGATC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00155	Aminotran_1_2	Aminotransferase class I and II	Domain	Interproscan
PF09029	Preseq_ALAS	5-aminolevulinate synthase presequence	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004839	Domain	Aminotransferase, class I/classII	Interproscan
IPR010961	Domain	Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase	Interproscan
IPR015118	Domain	5-aminolevulinate synthase presequence	Interproscan
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015422	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR050087	Family	8-amino-7-oxononanoate synthase class-II	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13693	CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003870	Molecular Function	5-aminolevulinate synthase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0005759	Cellular Component	mitochondrial matrix	Interproscan
GO:0006778	Biological Process	porphyrin-containing compound metabolic process	Interproscan
GO:0006783	Biological Process	heme biosynthetic process	Interproscan
GO:0009058	Biological Process	biosynthetic process	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0033014	Biological Process	tetrapyrrole biosynthetic process	Interproscan
GO:0042541	Biological Process	hemoglobin biosynthetic process	Interproscan
GO:0048821	Biological Process	erythrocyte development	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-