Gene detail

Detailed information of Lsat_s004.g0216.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s004.g0216.t1	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM-17	Lsat_scaffold004	5359677	5368595	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s004.g0216.t1

CGACTTCCGGCGTTTACAAAAATGGAAGAATATGCACGTGAACCTTGTCCGTGGCGTATCGTGGATGACTGTGGCGGGGCCTTTGCCATGGGCGCCATTGGTGGAGGTGTCTTCCATTCCATCAAGGGATTCAGAAATGCTCCCAGTGGGCAGTACAGAAGACTGATTGGCAGCATGCTGGCAGTGAAAGAACGAGCACCAATTACAGGCGGCAACTTCGCTGTATGGGGAGGTCTGTTCTCTGCCATCGACTGCACAATGGTCTACGTACGTAAAAAGGAAGATCCATGGAACTCAATAACAAGTGGCGCTCTCACTGGGGCAATCTTGTCAGTCCGAAATGGTACAGCAGCAATGGCCGGCTCAGCAGTGATTGGTGGCGTGCTACTAGCATTAATAGAAGGCATTGGTATCCTCATCACGCGGTGGTCTGCTGATCAGTTCAGTCAAGCCAATCAACAGGTAGTACCACAAGACGACCCGTCACAGTTACCCCCGAAGTCTGCAGCACCAACCTTCGGCAGTATGGGAGCACAGTACACATCATCAACGCAATACCAGTAGGGGAATTAACACCACACACTGACTGACTCACACGGTCAGAACACTCAACACTTACACTGGTCACTCGCAGTGACTGACAGAATAACGATGGATGCCAATCACAATGTTGTTGCTTAACAAACATTTGCACTGGCTGATTTGAGATTGTGCTGGACAGGCATAGATAGATGGATATGTTGCTTGTTGGCATGGCAACGTGACTGGCTGATTGACCAGCACTTGTCCAGAACTAGGAAAGTAAAAATTGTGTGAATGTAGCGGAAGTGTTTGGAGCGTGTGAACAGGAGTGAGAGAGACTTCAAGGTGGACATTTGTGATTGAACCGGTGCGGGGGTTGTGCCCTCTGTGTGGGGAAGATATAGAGCCCTCAAGGTAAAGGATATATCACAATATGTGATATGTCAGTCATGTGAAGGAATGATGCACAGTGGGTCGTGTAATATGACAATACACAACATGGGTTATGTATGATTGTAACACATAAGTGATGCATGTGTCGTGTAAAATTATGAAACAACACAACTTAGATCATGGGTGTTTCTGATGCATACTTTAGTACATGGGTTGTGTAAAATTACACCAATATGTCGATCATGTAAAATTACACTAAACAACTTGGGTAATGTATGATTCTGATACATACTGAATATGTGGGTCGTGTAAAATTACAATATACAGCATGGGTGAGAAATACAGTGGTGATGTTTAAAGAGAAGGCCACCAGTCAACTACACAAGTATCGGCAATGCCCAATTGTGAATGTACTGTAAACCAGAGTTTACATTATGTGACTAGGTTGATGTAACTAATTGTGAGGATTTGTCACATTCATTATCGAGTTGACACACTGGAGGTGTCCACGCCACCCGGGGGTCACGCTGCCAACCGCCATTAATGGATAAAACGGAGGGATGGAATGTTTTCGGACAAGTGAGAAGTCCTTTGGGTTTCAGCATTTTTGGAAAGTACTGCGTAAAAAAAAGTCAGTGTACGGGTGATGTCAGGCTAATAATATTATATATAATTACATTATGTGTGTTCTCATATGCCACTATTTCCATAGCTAATTCTATTGTCTAAAATCAAAGTTACCTGGTAATCACATATAATAAGATTTACTCACGTACAAGTGACAACTGAGTGCATCATATGAAACCCAGCTTTGTTGTCAAATTAGGATGTTTTTAAAATGGCAATATTGGCGTTCATTTCAGTGCGCCAGAAGCATGTGGCTTGTTTCTGGCATCAAGATCGTCGATGGTTATTGTCTGTATGTCCCATAATGTGGAATGTCTTGTGTTACACAAACTGAAGCAGAGGTTTGATCACATCTGCCAGTAATCTATGAGCGTTTATGAGTGGATACAACTTACAAGTACAGTTGGCAATGGCATAAAGAAACTTTGGTTTACTTTATGTGAAAAGGGAATTTTTTTTGGAATATATATGTATAAATATATATGTCTGCTTGTTTTTTTTCTGTCAGCCTTGTGAAATATAAACAAACAAACAAATCTTGTATAACTGAATGAAAGGTATCTGCTTTGTGGTGTTTTGTGAGACTTTCTCCTTCCCGTCTTGTACAGTATGTAGGAAGCTGTAATTTTAATAAACAATTAAAATTACGAAAATGTCAAGCATAGCCGTTGATTACTTATAATTCATTATTTGAAGCAACATACCTTTGGTAGATGACAGTCTCACAAGAATCTTGTCAAACTTTACAAAAACAAATTGAAATTTTTAAACTCAAGAATCCCACCCCTGGGGGAATTTTGAAAACCTAAAATGTACAAACCACCCCTTGTGCTCCGAGAAAAAAAAATTTCCGTGAAACTGACGGAGGTATGATGGTACAAAGAAACAGCCACTCTCGGCTTTATAGTATACATTATAGGGTATTTTATAGTATACAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02466	Tim17	Tim17/Tim22/Tim23/Pmp24 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005678	Family	Mitochondrial inner membrane translocase complex, subunit Tim17	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10485	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM-17	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005744	Cellular Component	TIM23 mitochondrial import inner membrane translocase complex	Interproscan
GO:0008320	Molecular Function	protein transmembrane transporter activity	Interproscan
GO:0030150	Biological Process	protein import into mitochondrial matrix	Interproscan
GO:0031305	Cellular Component	obsolete integral component of mitochondrial inner membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-