Gene detail

Detailed information of Lsat_s001.g1022.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s001.g1022.t1	SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA	Lsat_scaffold001	27734276	27751190	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s001.g1022.t1

CTTTGGCTTTGCCTGGCTTGCCTTTAGTCCGGATTAGACTTAGTCTTAGTAACATTACTTGCAAATCTTGGATAAATGTTGCTGTGACAAGCGAGTCACTGCAACTGATTCAAAGATGAGCATCAAAGTAGGTTTCCGAACGGTGTGTTGTGTGGCAAAGAAGCAGACGCTGGTCAATTTCTTACAGAAACCAGGGTCATTGCGTGGTTTTACAACAGCCAGTATCTCGCAACAGAAGCTGCAAACAGCTGGTCATGAGCAGAAGCCACAGTCAACTGTATTGAAGAACAACAATAACAACCTGGATACGAATGGTGCAGCCATGACGGAGTTGATCCGAGACTTCCTCAGTCCGGCCATGTTCTATGAGCGACTTGCCGACATTAACATCGACTACTTCTGTGGCGTACCCGACTCACTGCTCAAAGATTTTTGTGCCTACGTGACAGACAACACGCCTACTGAACGACACGTGATCACAGCCAATGAAGGAAATGCCATTTCCCTGGCAGTCGGCTATCACATGGCCACAAGACGTTCTGCACTTGTCTACCTGCAGAACTCTGGTCTGGGTAATGCAATTAACCCCTTACTGTCCCTGGCTGACCGCGATGTCTATCGTATCCCCATGTTGCTCCTGGTGGGGTGGCGTGGTGAACCCGGGAAGAAGGATGAACCACAGCATCGAGTGCAGGGACAACTCACCCCCGGACTGCTTGCCTCACTTCATATCCCCTTCCAGATACTGCCTGATTATGAAGAGGGAGCCCAACAGGCACTGCAGGCAGCCCGGCACCACATGGACACCACCAGCAGTCCTTACTGTCTGCTGGTGAAGAGGCAGATCTTTGCACCTTACAAGCGGCCTGCACCCGAGCCAATGAATCCGGAAATGTTGACGCGGGAAGGTGCCCTGATATTGGTGGCAGATGCTTTGGGAGACAGGGACATTGTGGTTGGTACGACTGGAATGCTCTCCCGTGAGCTGTTTGAATACAGGGTGGCCCGAGGTCATGGCCATGAGAGAGACTTCCTGACAGTCGGCTCCATGGGTCACGCGTCTAGTATTGCCCTCGGTATAGCAAAACAGAAGCCTGGCAGGCAGGTGTACTGTTTTGATGGGGACGGCGCAGCGATCATGCACCTAGGTGCCTGGGCAATGGTGGGCCAGAGCGGTGCCGCCAACTTCAAGCACATTGTCTTCAACAACGGCGTTCATGAGTCAGTGGGAGCACAACCGACAGCTGCCATGGACACAACACGCTTCTCCTTCAAGGGAATCGCTCAGTCCGTCGGATACAAGATGGCTCTGGTGGCAACATCTAGGGAGGAGATTGTGTCAGCTGTACAGACCCTGCGAGAGGCCGAGGGTCCTGCCCTGCTCGAGGTGAGAGTGTGCATTGGCCACCGCAAGGATCTTGGTCGTCCCACGCGCACACCCGTCGAGAACAAACAAGACATTATGACATTTATTGCTGAAACCGACTAAAGGCAGATCAGATGTAAACCCCATTTGGAAATGGCCGTTACGTTGATGATTTATTTAATTGGCCAACAATTAGTTGGATCTGGTCAAACCAGGGATTGTGTTAGTACAATAATTGTTTATCATTCTGCATAGTTGTTGCACTCACGTAAAGTAATCGTTTTTGTTTATCATGATACTATGTCACAACCAAGAGGACTAACTTAACTAGCTCAATGACATCTGAATTACTAGTTACTGCAGTCATCTTCAACACACTGTATATCATAAGCATTGCGTGTTCACTAATTATTACCCCAGTGCACGTTTTTGCATAAACATTTAGCAATGTCAAATGCAACAATATGTGGTTAGCATCAGAAAACTAGCATATTTTGTGTGCAACATTTCTTTATTGTAGTGTTTATCATTGATGCAGTATGTTGTCTCTGCAGCATATGCTTCAGAATATCAACTTTACATTTATATAGCGTCGTATTTGCCACTGCCACATTTGTTCAACGTTGATTATAGTATAATGGACACAAAAAATAAGGACAATGAATTACCTGTTTGTGGTTTATGAAATTATGAACATACCTTAACACAGTCGGAATGTTACAGTAAGAACTGATTGGCAATGTTAGAGATGTCCAGTGGCATTAAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02775	TPP_enzyme_C	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain	Domain	Interproscan
PF02776	TPP_enzyme_N	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000399	Conserved_site	TPP-binding enzyme, conserved site	Interproscan
IPR011766	Domain	Thiamine pyrophosphate enzyme, TPP-binding	Interproscan
IPR012001	Domain	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain	Interproscan
IPR017684	Family	Phosphonopyruvate decarboxylase	Interproscan
IPR029061	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan
IPR051818	Family	Thiamine pyrophosphate-dependent decarboxylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42818	SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000287	Molecular Function	magnesium ion binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0030976	Molecular Function	thiamine pyrophosphate binding	Interproscan
GO:0032923	Biological Process	organic phosphonate biosynthetic process	Interproscan
GO:0033980	Molecular Function	phosphonopyruvate decarboxylase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-