| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Lsat_s001.g0709.t1 | CYTOSINE-SPECIFIC METHYLTRANSFERASE | Lsat_scaffold001 | 18586110 | 18635584 | + |
| CDS | |||||
| Lsat_s001.g0709.t1 | |||||
| Transcript |
| Lsat_s001.g0709.t1 |
| Protein |
| Lsat_s001.g0709.t1 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00145 | DNA_methylase | C-5 cytosine-specific DNA methylase | Domain | Interproscan |
| PF01426 | BAH | BAH domain | Domain | Interproscan |
| PF02008 | zf-CXXC | CXXC zinc finger domain | Domain | Interproscan |
| PF06464 | DMAP_binding | DMAP1-binding Domain | Domain | Interproscan |
| PF12047 | DNMT1-RFD | Cytosine specific DNA methyltransferase replication foci domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001025 | Domain | Bromo adjacent homology (BAH) domain | Interproscan |
| IPR001525 | Family | C-5 cytosine methyltransferase | Interproscan |
| IPR002857 | Domain | Zinc finger, CXXC-type | Interproscan |
| IPR010506 | Domain | DMAP1-binding domain | Interproscan |
| IPR017198 | Family | DNA (cytosine-5)-methyltransferase 1-like | Interproscan |
| IPR018117 | Active_site | DNA methylase, C-5 cytosine-specific, active site | Interproscan |
| IPR022702 | Domain | DNA (cytosine-5)-methyltransferase 1, replication foci domain | Interproscan |
| IPR029063 | Homologous_superfamily | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Interproscan |
| IPR031303 | Conserved_site | DNA methylase, C-5 cytosine-specific, conserved site | Interproscan |
| IPR043151 | Homologous_superfamily | Bromo adjacent homology (BAH) domain superfamily | Interproscan |
| IPR050390 | Family | DNA Cytosine-5 Methyltransferase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10629 | CYTOSINE-SPECIFIC METHYLTRANSFERASE | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0003682 | Molecular Function | chromatin binding | Interproscan |
| GO:0003886 | Molecular Function | DNA (cytosine-5-)-methyltransferase activity | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0006346 | Biological Process | DNA methylation-dependent constitutive heterochromatin formation | Interproscan |
| GO:0008168 | Molecular Function | methyltransferase activity | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| GO:0010216 | Biological Process | obsolete negative regulation of gene expression via chromosomal DNA cytosine methylation | Interproscan |
| GO:0010424 | Biological Process | obsolete DNA methylation on cytosine within a CG sequence | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
© 2024 All Rights Reserved.
