Gene detail

Detailed information of Lsat_s001.g0441.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s001.g0441.t1	MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED	Lsat_scaffold001	11026358	11040162	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s001.g0441.t1

CGGAGCGACCTCAGTAGAGGTGGCTTTCGTAAACATTTAACAATGGCAAGGTTTAGCAGCTTAAAGGTGGTGAGCAAGTGTTTGCGGCAACTACCCCAGGTGGGGTTGCGACCCCTGTCTACATCAGCTGATGCTGTGTCCGAGTCAGCACTGGGCGGGTGTTCATTCGAACTCTCAGATGAACAGAAGGAGATGCAACTGCTGGCGCGAAAGTTTGCCCGAGAAGAGATCATTCCCGTCGCGGCTCACCACGACCACACTGGAGAGTATCCGTGGGACATCCTGAAGAAAGCATGGGGACTAGGCCTTATGAACACTCACATTTCACAAGAATATGGTGGATTAGGCCTGGGTATCTTTGATGCGTGTATGATGACAGAGGAGTTGGCATATGGCTGCACGGGGATACAGACAGCTATAGAGGCGAACTCACTGGGGCAAATGCCAGTGATGCTGGCTGGCAACGATGCTCAGAAGAAGAAATACCTTGGACGTATGACCGAGGAGCCCCTTATGTGTGCCTACTGCGTAACCGAGCCTGGGGCAGGGTCAGATGTAGCTGGTCTGAAGACAAAAGCAGTGAAGAAAGGAGATGAATACGTGCTCAACGGGCAGAAGATGTGGATTACGAATGGTGGAGTAGCAAACTGGTACTTTGTGTTGGCTCGCACTGACCCGGACCCAAAAACGCCTGCAAGCAAAGCCTTCACTGGGTTCATAGTCGACGCGGACAGCCCAGGCGTTGTTAAAGGCAGGAAGGAGTGGAACATGGGACAGCGAGCGTCTGACACTAGGGGCATCACGTTCGAGGATGTTGTTGTGCCAAAAGAGAATGTCCTGACGAGTGAAGGATTTGGGTTCAAGATCGCCATGGGTGCATTCGACAAAACTCGGCCTCCGGTGGCTGCAGGGGCTGTGGGGCTGGCACAGCGGGCACTTGACGAAGCAACGAAGTATGCTCTTGAAAGGAAGACATTTGGCAAGTTCATCTACGAGCACCAGGCGATATCGTTCATGTTGGCTGACATGGCCATTGGCATTGAGTCGGCGCGTCTTGTCACCCAGAAATCGGCGTGGGAAGTGGACCAGGGTCGTCGCAACACCTACTTCGCCTCCATCGCCAAGGCCCTCTCAGCCGACGTTGCAAACAAATGCGCCACAGACTGCGTACAGATTTTTGGAGGAAACGGGTTTAACAGTGAATACCCAGCCGAGAAACTGATGCGTGATGCAAAGATATACCATATTTACGAAGGTACCGCGCAGATCCAGCGTATGATCATCGCTCGAGAGCTGATCACAAATGCCCAACAGATGGCACAATGAACCTTCACAGGTGGCACCACATGGCTTCAGGGCTGGATGATTTCACCGTCTGTATTTGGGAAGATTTCTCAGCATGTTTTCGTGAGAATGTTCTCAGTTGATTGATCTGTTGCCAGCTTGTGACTGTTTATCATCAGCTGTTTGGTGAAATGCAGATGGTATACTTCAGATACTTAGAGGCAGCTGCTCATCTCCCAAAGTCTGTGCAATCATGTTAAACAGTTCTCTGGAACCAAGTCTGTGAAATAAGTTGATGTAATTTGGTTGTGCAACCAAATATGTGTAATTGGTTTGTGTAATCAAGTCTGTAATAAATATGTGTGATAAAGTTTGTGTAACAAAGTTTGTGTAATAAAATGTGTGCATCCAATTTTTATAATAAGTCTGTGTAACCAAATCTGTGATGCCAAGTATGTAATAAGTCTATGTGTAAGTCGTTAAGTACATACTAATTATACAAAGAAGGGAACAGAGCACTGAATGCAATGACAACGTGTATGATTAAACAAATGATAAATACTGTTTTCTTATAAATGTATTTAATCGACAGCATGCAGCTGTAAACTGTCATCATGTCTGACAGCCAAATGGTGCTATTTGCCATATTTAAAAACATTAATGTCATATTAATTATTCCTTGAGTACTCAACCAATACC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00441	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF02770	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan
PF02771	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006089	Conserved_site	Acyl-CoA dehydrogenase, conserved site	Interproscan
IPR006091	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR009075	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR009100	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR013786	Domain	Acyl-CoA dehydrogenase/oxidase, N-terminal	Interproscan
IPR036250	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR037069	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Interproscan
IPR046373	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR050741	Family	Acyl-CoA dehydrogenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48083	MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003995	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0016627	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0051793	Biological Process	medium-chain fatty acid catabolic process	Interproscan
GO:0070991	Molecular Function	medium-chain fatty acyl-CoA dehydrogenase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-