Gene detail

Detailed information of Lsat_s001.g0286.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s001.g0286.t1	TUBULIN	Lsat_scaffold001	7303145	7315189	+

Gene Structure

More details in Jbrowse Sequence

CDS

Lsat_s001.g0286.t1

ATGCTTCTAGTAGACATTCTCTTCACAGTTGTTGTAGCGATTGCTAGCATTGTGCTAAGCGACACAACTGCACAATCGTCTACTGACAAAACTTGTACTGATGCAAAGTGCCAAGACACTGCGAAATCACGTCATGACTCAGCCAAATATCTCCAGAGGCCAAAGGTTATTTTGTACTGGACAACATACTACGGCCACAGAGATTTTGAGTTTGGATTGGGACAACAGCCTTTCAAGGATGCTGGGTGTCGCATCACTAACTGTGTTGCAACAGATGACCCAACACGGTCACAAGAGGCAGATGCACTGATGTTCCACATGCGTAATGTCAATCAGCAAATGGCTTATCCAAAGAAACGACTTCCACATCAACGATACGTATTTTTCCTGCTTGAACATCCATATCATCAGTGGAATGACCTTCGTGGCTTCAGTGGATTCTTTAATTTGACAATGACTTACAGGCGAGATTCAGACATATTTATGCCATATGGAAAAATAGAAACTTTGAGTCAGTCTGAAACTGACTCTCCTGTTGTTGTGCCGCACAAGAAGTCACAGTCATTGGTTGCTTGGTTTGTCAGCAACTGCCAAAGTCACAGCAAGCGAGAGGAATACGTTAAGGAATTACAGAAGTACATTCCAGTGGACGTGTATGCTAGCGTGCAAAGCCAACGTTCGCTGTTTCTCGGGCGATATTACAGTTTAATACAACGAAGCCAAAGGATCATGTCTGTGGTAACAGTACAAGTTGGCCAGTGTGGAAACCAAGTTGGTAACGAGTTTTTCACCAGAGTAATGGACGATGTATTGACAGGAGGAGGACATTTGGGCCAGTGTACACAGTCTCAAAATGACAGCTATTGCGAAGAGGCATACAATCGTTTCTTCACAGAAGATGAACAGCTATCAAAGTCGTGCCATGAGACAACTTGGACAGCAAAGTCAGTAATGGTTGATATGGAATCAAAAGTAATCGAACAAATTGCAAAGGAAGCAAAGCAGTCAGGAAGGTGGAGTTACCCTGACAATCAGTTGTTCTGTCAGAAACGAGGATCGGGCAACAATTGGGCATGTGGTTTCTGTTTGAACGGCCCAAAAGAAAGTGAAGCCATTTTGAACATGGTGCAGACAGAAGTTGAGAAATGTGATCGACTTGATGGCTTTCTGACACTGCTCAGTCTTGCAGGCGGCACTGGTTCTGGTCTCGGTGCCTACGTGACGCAACGTCTCCGCGACGAATTCCCTCACTGTTTCCTCCTCAACCAGGTCGTGTGGCCGTATAGCACGGGAGAAGTGATTGTGCAGAACTACAATGCTGCGTTGACGTTGTCTCATCTCTATCAGACAAGTGATGCAGTGCTGATGATGCAGAATGATACACTTCAGCAAATCTGCACAAAACTGTTGGACATCAAGAAGGTTTCTGTTCAAGATCTCAATAAAGTAATCTCCCACATGATGGCCAGTGTTCTCCAGCCGGTGTATGGAAGCGCTGACCAAAGCTCCTGGGCAAGCCACGTCAGCGGTCATTTGGGGGGTCTGCTAGAACACCTGGTTGCCCAGCCGGAGTATAAGCTGCTGAGTATCCGAAGTATCCCCCTGATATCTGACAAGTCGATGCAATTCAGCTCCTACCAGTGGCACGGTCTCCTGAAGCATCTTACACAGATGCTCATAGCTGATGCTCCCATGGAGGAAGGAATTGACTGGAGGGTAGGTGGAACTTACTCCTCAGGAAAGATAAATCGCTCACTGGCAACCTTACTCATCCTGAGGGGGCATGATCTGCACAAGACGAATGCTGCCAGCTTCCTGGAGCCACACCTCTACACATCGTGGATGCCCCCAGATGAAACATGCAGGCAGTGGGTCCACCCCAGGCCTTTTTGCAACTATAATCGCTCGGCCGTCTTGCTCAGTAACAGCGTGTCGGTCGTGAACCCTATGGTGAACTTAATGGAAAAAGCGTGGTCTATGTTTGCATCGAGAGCATACGTGCACCAGTATACGAAACATGGATTAACTGAGGATGATTTCCTTGATAGCTTTGCTGGACTAGAGCAAATTATTGCAAATTACAAGAAACTCTGA

Transcript

Lsat_s001.g0286.t1

TCTTATTAATTGGCATGCGTTATTAATGCCATTAATTATAATTCCAAGTTGATGTTCTTTGATGTTAACATCCACGTACCCGATCGCTTGATACTCGAGATTGCTCTGACGTGGTCTTCAAGGCGTTCATCAAAAGACTGACAAAATGCTTCTAGTAGACATTCTCTTCACAGTTGTTGTAGCGATTGCTAGCATTGTGCTAAGCGACACAACTGCACAATCGTCTACTGACAAAACTTGTACTGATGCAAAGTGCCAAGACACTGCGAAATCACGTCATGACTCAGCCAAATATCTCCAGAGGCCAAAGGTTATTTTGTACTGGACAACATACTACGGCCACAGAGATTTTGAGTTTGGATTGGGACAACAGCCTTTCAAGGATGCTGGGTGTCGCATCACTAACTGTGTTGCAACAGATGACCCAACACGGTCACAAGAGGCAGATGCACTGATGTTCCACATGCGTAATGTCAATCAGCAAATGGCTTATCCAAAGAAACGACTTCCACATCAACGATACGTATTTTTCCTGCTTGAACATCCATATCATCAGTGGAATGACCTTCGTGGCTTCAGTGGATTCTTTAATTTGACAATGACTTACAGGCGAGATTCAGACATATTTATGCCATATGGAAAAATAGAAACTTTGAGTCAGTCTGAAACTGACTCTCCTGTTGTTGTGCCGCACAAGAAGTCACAGTCATTGGTTGCTTGGTTTGTCAGCAACTGCCAAAGTCACAGCAAGCGAGAGGAATACGTTAAGGAATTACAGAAGTACATTCCAGTGGACGTGTATGCTAGCGTGCAAAGCCAACGTTCGCTGTTTCTCGGGCGATATTACAGTTTAATACAACGAAGCCAAAGGATCATGTCTGTGGTAACAGTACAAGTTGGCCAGTGTGGAAACCAAGTTGGTAACGAGTTTTTCACCAGAGTAATGGACGATGTATTGACAGGAGGAGGACATTTGGGCCAGTGTACACAGTCTCAAAATGACAGCTATTGCGAAGAGGCATACAATCGTTTCTTCACAGAAGATGAACAGCTATCAAAGTCGTGCCATGAGACAACTTGGACAGCAAAGTCAGTAATGGTTGATATGGAATCAAAAGTAATCGAACAAATTGCAAAGGAAGCAAAGCAGTCAGGAAGGTGGAGTTACCCTGACAATCAGTTGTTCTGTCAGAAACGAGGATCGGGCAACAATTGGGCATGTGGTTTCTGTTTGAACGGCCCAAAAGAAAGTGAAGCCATTTTGAACATGGTGCAGACAGAAGTTGAGAAATGTGATCGACTTGATGGCTTTCTGACACTGCTCAGTCTTGCAGGCGGCACTGGTTCTGGTCTCGGTGCCTACGTGACGCAACGTCTCCGCGACGAATTCCCTCACTGTTTCCTCCTCAACCAGGTCGTGTGGCCGTATAGCACGGGAGAAGTGATTGTGCAGAACTACAATGCTGCGTTGACGTTGTCTCATCTCTATCAGACAAGTGATGCAGTGCTGATGATGCAGAATGATACACTTCAGCAAATCTGCACAAAACTGTTGGACATCAAGAAGGTTTCTGTTCAAGATCTCAATAAAGTAATCTCCCACATGATGGCCAGTGTTCTCCAGCCGGTGTATGGAAGCGCTGACCAAAGCTCCTGGGCAAGCCACGTCAGCGGTCATTTGGGGGGTCTGCTAGAACACCTGGTTGCCCAGCCGGAGTATAAGCTGCTGAGTATCCGAAGTATCCCCCTGATATCTGACAAGTCGATGCAATTCAGCTCCTACCAGTGGCACGGTCTCCTGAAGCATCTTACACAGATGCTCATAGCTGATGCTCCCATGGAGGAAGGAATTGACTGGAGGGTAGGTGGAACTTACTCCTCAGGAAAGATAAATCGCTCACTGGCAACCTTACTCATCCTGAGGGGGCATGATCTGCACAAGACGAATGCTGCCAGCTTCCTGGAGCCACACCTCTACACATCGTGGATGCCCCCAGATGAAACATGCAGGCAGTGGGTCCACCCCAGGCCTTTTTGCAACTATAATCGCTCGGCCGTCTTGCTCAGTAACAGCGTGTCGGTCGTGAACCCTATGGTGAACTTAATGGAAAAAGCGTGGTCTATGTTTGCATCGAGAGCATACGTGCACCAGTATACGAAACATGGATTAACTGAGGATGATTTCCTTGATAGCTTTGCTGGACTAGAGCAAATTATTGCAAATTACAAGAAACTCTGAAAGGTATGATTTACGACGGAGACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00091	Tubulin	Tubulin/FtsZ family, GTPase domain	Domain	Interproscan
PF00852	Glyco_transf_10	Glycosyltransferase family 10 (fucosyltransferase) C-term	Family	Interproscan
PF17039	Glyco_tran_10_N	Fucosyltransferase, N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000217	Family	Tubulin	Interproscan
IPR001503	Family	Glycosyl transferase family 10	Interproscan
IPR002967	Family	Delta tubulin	Interproscan
IPR003008	Domain	Tubulin/FtsZ, GTPase domain	Interproscan
IPR008280	Homologous_superfamily	Tubulin/FtsZ, C-terminal	Interproscan
IPR017975	Conserved_site	Tubulin, conserved site	Interproscan
IPR023123	Homologous_superfamily	Tubulin, C-terminal	Interproscan
IPR031481	Domain	Fucosyltransferase, N-terminal	Interproscan
IPR036525	Homologous_superfamily	Tubulin/FtsZ, GTPase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11588	TUBULIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000226	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0000278	Biological Process	mitotic cell cycle	Interproscan
GO:0005200	Molecular Function	structural constituent of cytoskeleton	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005874	Cellular Component	microtubule	Interproscan
GO:0006486	Biological Process	protein glycosylation	Interproscan
GO:0007017	Biological Process	microtubule-based process	Interproscan
GO:0008417	Molecular Function	fucosyltransferase activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-