Gene detail

Detailed information of Lsat_s001.g0257.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s001.g0257.t1	HYDROXYLAMINE REDUCTASE	Lsat_scaffold001	6594176	6612200	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s001.g0257.t1

GCGCTACTCTCGGTGTGTCTGTTGTGCTGCCGAGAGTTGACAGTTATTTTGGTGGGAGCTGAGGTTAGAACAGGTTGAGAATCATGGCTGCTATGAGGTTGAGAGCGGCTTCTCGGTTGGGTCGATTGTTTTCTGAATTAAGAGTGTCACAATCGTCGCTACGACCGGCCCGGAGATTGAAGTCTTCGCTGACGAGCGGGGAAGCATCGCGCGCTCCTGCTGCGGCCGCTGCCAGGAATGCATGGCGTCCCATCAGCACCCAACCGGAGGAGCAGATTGTCGAGGGAGACATGTTCTGCTACCAGTGTGAACAGTCGAAGCTGAACAAGCACTGCACCGAAATTGGTGTTTGCGGAAAGACCCCACAGGTGGCAGCACTGCAGGACCTGCTAGTGCACGTTATTAAGGGCGTATGTCTGTACAGTCATAATGCTCAAGAGTTGGGCGTGCCGATAGGCCAGGACACGTATTCCTACACTTTCAGTACTCTCTTCAGCACACTGACGAATGTGAATTTCGACCCAGACCGATTCCTGGAGTACATCGCAGAGGGAGTGGCCCTGCGGGAGAGACTGAGGGAGCAGTATGAGGAGGCCTGCAACAAGAAGGGAGTTTCTCCCAAGCAGTTCAGGGATCCTGCTGCCTCCTGGCTCCCAGCCAACGGGATGATGTCCAATGTGGCAGCCATGGAAGAGGAAGGTCGCAAGGTGACAGTACAGAATGACATTAAGGAATACGGAGCTGACGTACACGGAGTGAGACAGATGATTATGTATGGCATGAAGGGTTTGTCGAGCTACGCACGCCATGCAGAACTGTTGGGTCAGTTTGACACGGCTGTCGGGGCGTTTGTCCACGAGACTCTTGCCTTCCTCATTGATGGCGACGAGAAGGAAAGACATGACCTTGGAGCCAACCTTGGTCTCGCACTCAAGGTTGGAGAGATCAACGTCAGGGTCATGGAGTTGCTTGACAAAGGTCACTGCACACGATTTGGCAGTCCCGAACCAACAGCTGTTAATCTCATTCCCGTAGAGGGAAAGGCTATTCTGGTGTCAGGACATGACATGAACGACATGGAGGCCATCCTCCAGGCGACCGAGAACTCGGGCATCAACGTGTACACACATGGAGAGATGCTTCCCGCCCATAGTTACCCGGGACTCAAGAAGTACAAGCACCTTGTGGGCCACTGGGGTGGCGCGTGGCAGCTGCAGAAGTTTGAATGGGCTGACTTCCCTGGACCCATCCTTGTGACAACCAACTGTCTGATTGAGCCAATGAAGTCCTACAGGGACCGTCTGTTCACACTGAACGAGGTAGGCTGGCCGGACATCCCTCACATCGATGTCCACAAAGATGGAATGGACGTGGTCATGGCGAACGCAAAGAACCAGCCCGGCTTCACGGCAGCGGACGCCCAGAAGGAGATGAGGATCAAGTCGCTGACTGTCGGCTTTGGACATGACGCGATCATCGCTAATGCCGGAAAGGTAATTGACGCTATCAAGTCAGGCAAGCTGAAGCGCATCTTTGTCGTGGGAGGATGCGATGGCCGCGAGAATAAACGCAAGTACTTCACCCAGTTTACCCAGGCTCTGGCAGAAGACACAATGATACTCACCCTCGGCTGTGCCAAGTACCGCTTCAACCACCTGGACTTCGGGAACCTCAGCGACACTGGTCTGCCCCGCCTGCTCGACCTGGGCCAGTGCAATGACACCTACACGGCCATCTTGGCTGCACAGGCGCTTGCTGACGCGTTCGGAACCGACGTCCATCATCTGCCATTGTCAATCAACCTCGCATGGATGGAGCAGAAGGCTATTGCTGTGCTGTTGTCGTTGCTCAGTCTCGGTATCCAGAACATCCGACTCGGACCTGTCCTTCCCGCCTTCCTCACCCCCAACGTGACTGGGATCCTCGTCGACAAATTCAAGATCTCACTGGTTGACAACAAGAACCCACAGGCTGACCTGGACAAGATGATGCAGGAGTAATGGCGATAAGGCGACTGGTGAAGTCTGTTAGTTATTTTGTTCGCCTCTGCATGTGTACATCACGTGGTTGTTTGATGCAGTGTGGTTTGATATTCACTGTGTTTTCAGAGGTTTACTATGTCAACCAACAGTCCTGCAGTAAGATGTACATTTCGTTAATATTAAAAAGTAACTTTTGTACAATGTGGAGAAGAGTTAACACAGAGATGATGTTTCTCAATGCTCAGGGTCCTTATGCACCATGCTGTTCAGTTTGATATATGCTGGTTTCATTCAGAAAAAATGTGTCCTATTATGTATTAATTCTTGCAGGAATTACATTTTATTGTGCACTTAGCATATACATAACATGTACTATGAATGTTTCTTACAATGCATGATATATAGACTGATCTTATTTTTGTTAGAATATGTACGCGTGTCATTAGGTTATATTTTTTGTTTGATATATTTTATCATACACTTTGTTAGGCTTCATGAACATGTTTCTTTTATCCAGAGTTTTTATTATACAAAAAAGCTGTATTTTTGGTAGCACATTTTCTTGCAGTGGAACTACATTACAAATTGCTAACTGGTGTCTATTGGTCATTGCTACAGACAACTGTCGCTTGACGTTTGAAACAAGTTGTAGACAATTTTCGTAGAACAGTTATTGATGCTTGTACACTGTAAAATGTTCATATGGTACCATGTTAAAATTACCTTTATTATAAGCAATATTTAACTTAACGCTAGAGATGACCAGAAAGGCTACGGTGTATCTCCAGTTTTGCTGAAAAACTATGGTATACATGTAGTAAATTGAGCATTATGTTAGATTGTAGCCATCCTGCTGTAAAATGTTCATGTTTGAAGAGGATCAGTAAACGTGATGACTTGGTTGTTATATGTTGTTTCCATGGCTTAGGTTCTTGTTGCTATATTGGGTACTGTATAAAAAGGTGTTTTTAATCATGATG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03063	Prismane	Prismane/CO dehydrogenase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004137	Family	Hydroxylamine reductase/Ni-containing CO dehydrogenase	Interproscan
IPR010048	Family	Hydroxylamine reductase	Interproscan
IPR011254	Homologous_superfamily	Prismane-like superfamily	Interproscan
IPR016099	Homologous_superfamily	Prismane-like, alpha/beta-sandwich	Interproscan
IPR016100	Homologous_superfamily	Prismane, alpha-bundle	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30109	HYDROXYLAMINE REDUCTASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004601	Molecular Function	peroxidase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006807	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016661	Molecular Function	oxidoreductase activity, acting on other nitrogenous compounds as donors	Interproscan
GO:0042542	Biological Process	response to hydrogen peroxide	Interproscan
GO:0050418	Molecular Function	hydroxylamine reductase activity	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-