Gene detail

Detailed information of Lsat_s001.g0048.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s001.g0048.t1	TYROSINE-PROTEIN KINASE	Lsat_scaffold001	1149508	1190636	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s001.g0048.t1

AACTTCGTTTTTAAGTAACATGCCACATGGGCTATATTTCAATTGACTTGATTCAAGTCAGATAGTTTTAATTCTTAAAATGTATATAGTTCTCATGGATGTGGTTATTGGTTCACTTGCAGCAACAGAGAACTGCAGAACTGTGTGATGACCGATGGAACCAGTTTGAACCAACCCCAGTCAGCAAACTAGAGACTTGGTCTGAACAACAGAGCCACAATGGCTACTGACGAGAAACATATCATTAAGGACTTCATGGTGAAGAGATCTCAGATGAAGGGTCAGTTGAAGGCGGTGAACTACAAAAGTCGCTGGTTTGTGTTGACCGCATCAGCGCTTCGTTACCATGAAGGTGCACTCGAGACAGGAGTGAAGAGGGAGAAGGGGCGGATAAACTTGGGAGACGTGATATCTGTGGAGAAGGTGGATAACGATTCCTTAGAGAGGTCTGGAGATGCCTTCCAGGTGGTGTACAATGACACACATTCGCACCAAGTGTGTACTTTGTACATTATAACAACTCGTAGTAATCACTGTGATGAGTGGATCAAACTCATTAGAGAAGCATCTAAATCATGTGGGGCAAAGTTCTCGGAGATGTACCACCCTGGGGTGTACAATATCAAACAGCGGCGTTTCACCTGCTGCTACAGCATTGACAGGTACAACAGGGGATGCGAAGAGACAACATTCTGTCCACAACGTCCAGCTGAGTCTGAGAAGAGTGGGGCAGTTTGCACCGGGGGTGAGGTACATCCAGGGACCATGAAGCAGTTGCCCCCTCTGCCCCCTGAACAATCACAGACACAGACAAAAAAGAATAAAGTCATGATTGCCATGTACGACTATGACACGAATGAACCTGGAGATATGTGCTTGAAAAAGGGTGAACGGTATGAGATCATCGATGAGTCTGAACCTCACTGGTTGCTCGCCATCAGCCAGTTTGGTGAAAAGGGTTATGTGCCTGCCAACTACTTGGACGAGGAAAGTGAAACTGGATTAGAAACATATGATTGGTACTTCCATGGCATCACACGAATCCAGTATGAGAAGATCCTGCGAAACGACAGCAGGGAGGGATGTTTCCTGGTGCGGGACTCGAGCCAACAAGGGATGTATGCCGTGTCACTGTTGACCTTTACCAAGACGCCAGAAGGAAGCATACACCATTATCATATAAAAATGAACGACAAGAAAGAGTACTACCTGAATGAATCCCATGCCTTTAAAACACTGCCCCAGCTAGTAAACTTCCATCAGCGCTATAATGCTGGGCTGTGTGTGCGACTGCAAGCAACTCCCTCGAACACCACGGTCAGTCAGCCAGCCACTGCAGGTTTCGGACATGGTATAAACGAAATTGACCACAGAGACTTAGAACTTTTGGAGAAGCTCGGATCAGGCCAGTTTGGGACAGTCAAAAAGGCAGTCTACAAACCACGAAATCAAGAAGTGGCCGTCAAAATGCTTAACCCTGGAGCAATGTCAGAAGATGAGTTAATCAAGGAAGCTACGACCATGAAAAATCTACAACACCCGAACCTTGTGCAGTTGTATGGCATATGCAGTTGCCGACCCATCTATGTCGTCACAGAATTCATGAAGAATGGGGCTCTACACCATTATCTTCGAGACAATGACAAGAAGCTGATGCATGGTCCAGTGCGACTGGACATGTGTGTTCAGGTGTGTTTCGGCATGCTCTACCTCGAGTCCAAGCAATACGTTCATCGGGACCTCGCTGCACGCAACTGTCTCGTTGGGGAACGCAATCAGGTCAAAGTTGGCGACTTTGGCCTTGCGAGATTTGCAGAAGAAGGGTTCTACAACTGCCAAAAGGGTAATTTCTCTGTGAGGTGGGCCGCCCCAGAAGTTGTCACATTTCTACATTTCAGCAACAAGTCAGATGTGTGGGCATTTGGTGTGCTCATGTGGGAGGTGTATTCACTCGGGAAGATGCCATATGGCACCTCAACAAATGCTGATGTGGTTGAACACGTCAAACGCACACAACCACCACTGGAGAGACCCGACAGATGTAGTGCTGACATCTATAAAGTCATGACGAACTGTTGGAAAAGGAATGCTGATGACCGACCTCCATTCAAGGACATTCATGAAACGCTGAAGAAGCTGCACCGAAGAAGTTATGACATGTAACTGACAACATGTGATTTGCGGGACAATATTGAAAACTATATTTGTCTGAGGATTGTTAAGTTTTGTACATAGCGAAATGCTTCACGGTTTCCAAAAAAAAAGAAAATTTATTTATTTTTATTAAAGACAATAGCCAAATCGTTTTTATAAGTTTTGTACAGATTGTGATATTTTGCTCCATTTCAGTTATGGAAGTAAGCATTGCTTTATGAATGTGTACATATGTTTATTATTGGAATGTTTAGCATTCTCTATTATGATGACAGCTTTGTACATAGAAGCACAAATGTGTTAGCGTGCTTGATTAAAGATGATCTACAAGAAAGATGTAACACCTCATATAGGGCACGATTATATCACAAATTGTTTTAATGTTTATGCCATCCCTCCCTCCAATATCTTTCGTTCACATCATTCCAACATATCTCCTTCACATTACTTCAACATCTCTCCCTCACATAATTCCATGCAACATATTTCCCTCACATCACTCCAACATATCTCCCAACATAACTCCCTCACATAATTCCAACATCTCTCTCTCTCTCTCATAATTTCAACATATTATCTCCCTCACATCACTCCAACATATCTCCCACACATCACTCCTACATATTTCCTCATTTTGTTTTTGTTGTGTCCTTCGCCTTGGGTTCACAGAACATTTGCCATAGCTTTTTGGTTCCTCACATGTTGTTACTCCGTCTGTGGTAATGTGGCATACA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|SH3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00017	SH2	SH2 domain	Domain	Interproscan
PF00018	SH3_1	SH3 domain	Domain	Interproscan
PF00169	PH	PH domain	Domain	Interproscan
PF07714	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR000980	Domain	SH2 domain	Interproscan
IPR001245	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR001452	Domain	SH3 domain	Interproscan
IPR001849	Domain	Pleckstrin homology domain	Interproscan
IPR008266	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR017441	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR020635	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR036860	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR050198	Family	Non-receptor tyrosine kinases involved in cell signaling	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24418	TYROSINE-PROTEIN KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0004713	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0004715	Molecular Function	non-membrane spanning protein tyrosine kinase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-