Gene detail

Detailed information of LLU|FUN_030740-T1 in Lamellibrachia luymesi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
LLU\|FUN_030740-T1	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	scaffold_6	214392	238876	-

Gene Structure

More details in Jbrowse Sequence

CDS

LLU|FUN_030740-T1

ATGTATTGCGTATGTTACGAGTGGTTTGCCTTCCTCCTCGCCGCCAGCGTCGCCGTGGTGACTGGTGCAAGACTGAAAGAAGTGTCGGCCGCAGTGGGGACCACAGCCACCTTGTCCTGCACTGTTGACATTGGTGGAAATCTCCGGGTGATGTGGCTAGGATCTGAAGGTGAAATCATTAGCCAGGACGGCAATGTTCATTCTGATGACAATCGTTATTCGATACAGCGGCCATACTTGAAGGAGTGGAACCTTCAACTGAAGTCAGTTCGTAGGTCAGATGAAGGAAACTTCACCTGTGTCATTAGTACGACTCCACCGCTGAAGAAATATTTCTACCTGAAAATTGTTTTTCCTCCAACGATACGAAACATCTCGCCAGATATCTCTGCCAGTGTTGGTGATATCATCACATTGGTTTGTCGTGCATCGGGAAAGCCAACGCCAAAAATCACATGGAGCAAATACACACGTTACGGCCAGCTTATAAGTTTGGGGGTCGAAGGTCGCAGATGCAAACTTGTGAATGTGAGCGCCAGCGATGCAGGAACCTATCATTGTCTGGCGGACAACGGCGTGTCACCTGTGGCAACCGCAGATGTCGCTGTCGACATCAAATTTGCCCCACAAGTTGAGGTCCCGCACCAACGCATCAGTCAGCAGGTGGAGCACAACACATTGCTCCAGTGCATGGTCACTGCAAACCCACATGACCAGATGTACTGGACGAAAGATGGACAGAAATTGACCACTTCATCCAAGTACCGCATTGACAGTTATGACCAGAGTGGCAACACAAAGATATTCAGTCTCTATGTGTTTGGTCTTCAACAAGATGACTTTGGCACTTATGTGTGTGTGGCTGAAAACTCACTGGGCACTGCTAGAGCTGAGCTTCACCTCTCTGAATGGACTATCGGCCATGTCCGTGTCGTTGATGAGCCACGAAGTGTCGTTGTTGCAAAGACGACATCGGCCATGTTGAACTGCAGTGTCAAGGGAATGACTCGTACAGACAGCCTCACCTGGTGGTGGTTACCAACAGAATCTGCTCCAACAATAATCTTCGTTTCGAACCCTTCTGCAAGTGGCAGTGCTGTTGTTCATGTCGACACGGACAAATACGAGATTATTGGACATTATAATCTGTTGATAAAAAATGTTGAAGCAAAGGATGCTGGGAAATATGCATGCGAACTCAGCAACCGGAGCAATTACACAGCATATCTGACGGTTGTTGACTCCAAAGAATGTGACATTGACAGTCCAGTGACTGTTCAGGAAGGTCAGATGACAAATGTTGTCTGCCAACTCAACTTCACGGCTGACGATGCTGACATGATGCCGTGGCATGTCAGCTGGCATCATGGCAACCAGCTACTTGCTAGTACTAACCAAGATACCACGGCAATGGTAAAACGGGGATTGTCATTCCGAGCCACCCGCGATGACGCAGGCGAATACTTATGTGAGATTGCAAGTGGCAACAAGCCAAGGTTTAGTGCAACATGTTTGACTACAGTAACGGTACGGGTTCCTCAGTGCGATGCTTTAAGTGAAGTTGTGCATGGGACTTATGAACCGACCAACTGTACAACAAGTAAACAGGACTCCGGCAGTGTGTGCACCCTTACTTGTCAACCAGGGTATTACCCTGATGCCAAGGTCACCCTGCAGTGCACTAAGACATCTGAGTGGTGGTCACCTACCATTGCCCAGTGTGAGGCCCGGAATTCAACAGTCAGCTCCAGCATCCAGGACAACCAGAAAACATTTGTTGGCATAGCAACGTCAACATTTGGCCTTGCTGTGGGTGGTGTGTTGTGTGGCCTCATTCTGGTCTTCAGTGTCATCCTGGGCATTGTCATCGTATACTACAGACGCAGGCTCGCAGGATACAGACGTCCTCCGAGCGATTGTCCAGCGAAGGAACATCCCAACAGCAATGGTGCCCGTTCACCATGTGACGAGTCGGTCCCTATGATGGACACCCAAACTGAAAAGGTGTGA

Transcript

LLU|FUN_030740-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00047	ig	Immunoglobulin domain	Domain	Interproscan
PF00084	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000436	Domain	Sushi/SCR/CCP domain	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013151	Domain	Immunoglobulin	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR035976	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR051170	Family	Neural and epithelial cell adhesion domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12231	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-