Gene detail

Detailed information of LLU|FUN_027293-T1 in Lamellibrachia luymesi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
LLU\|FUN_027293-T1	TONSOKU-LIKE PROTEIN	scaffold_495	90300	118377	-

Gene Structure

More details in Jbrowse Sequence

CDS

LLU|FUN_027293-T1

ATGCCTGATTCACTGAAGATAGTACAACGTCTTCAGAGGGAGAAACATCAGGCTGAAAAGAAAAACGACTTCAAAGAAGTCGCCAAACTGTGCAACATCCTGGGAGACCTGTTGAAAGAGCAGGGTGAACTGGAAGATGCAATTTCTCAGCATATACAGGAACTGGACATTAGCACTACCCTCGATGACAAGATGGGCTGTGCAATCGCACACCGTAAAATCGGTGAGTGTCAGTGTGAATTGGGAAATTTCAAAGAGGCACTGAAGCATCAACGGCTCCACCTGGAGTTGGCGACAGAAAACAGCGATTTGGAAGAAGAGCAACGGGCGCTTGCAACCATTGGGCGTACATTTCTATACCAGGCGGAATCTTTGCGTGACCGGGATGAATCCCACAATGCCTTGCAGAGCGCTGAATCGGCATTCCTAAAGAGCATGGCAGTATGTGGAAAGCTGCAAAGTATAATTGATACAAAGGAGTACATGCAGATGAAGGCAAGGCTCTTACTTAATCTTGGTCTGGTGCATGACAACAAGGGGAACACAAGAACATGTGCTGAATACATCAAAAGAGCCATCAAGATTTCCGAGATGTACTCACTGCACGACGACCTGTATCGCTGTCAGTTCTGTCTCGCGGGGATCTACCAACGCAGTGGTGATGTTCGTGGTGCTGTGAGGTTACTAGTAGTTGCAGGGAAATGTGCGCAGAAGCTATCAGACAATTTAAAAGTTGGAGAAATCCACTTACAGAAAGCCATGTTGTTCATTCAGCTACGTGACTTCAGTGCTGCTAAACGCTGCTCGAGAAAGGCCAAGAAGATCGGTTCTCCAAATGCAGAAGAAGCTGAAAAGATCGTATACGCTTATAAGACAGTCCTGAAGATGAATCATTGTTCCGTGCGGCTGGACAGTGACGAGTTGACCGATGACCAAAGACTGAAGTTGTATGAGACACTGGGCGACTGTGCAGCCAACATTGGTCAATACACAAGCGCAGTCAAGTTCTACATGGACATGCTCCAAGTGGCTGAGTCATTGAAGAAACCCGACAGTGCCTTCATTCCCATCTACGTGTCCCTGGCGCAGACCTACTTTGATATGAAGCAGTACACAGATGCAGTAGTCTTCTACCAGAGGGAGCTTCAGTGTCGACATGATGACCACAACCAGATATGTCGGACTTGGCTGAACATTGCTGAGGCACAGGAACTAGATGGCGCCACTTACGAGACGGTCAAGGAAACATACAACCATGCTATGGAGAGCGCCAAGAAGGCCAGACATCTGAAACTGCAGGTGCATGTGCTGCGATCACTGTCCATTCTGCAAGGTAACATGGGTGACACCGACGCGAAGTCCGCGTCACAGAAGCAGCTGCAGACCCTGTGTGAGGCAAACAACATTGACGCAGATGAGGACCTGTCTGACTGCGAGGACACGCCACATGAGCCTGACAGCGAGGATGAGGACATAGGTCTGGAGGACTTCTCTGACTCAGAGCAGGACTTTGTTGGCTGCTTCGTCATGGCGTATCACATGCCCTGCCAGACGAAGACGCTGTTGTCTCACGATGGTGGTCATCCATGGGAGGGAGACGTACAGTTCTTGGTTGATAGCAGTAATGCGGAGGAGGAGTTTGACAATTCCCGTGTGTCGGAGGGAACAGGGGGAAGCCGGACTCAGAGGATACGCAAGTTGAAGGTCAACGAGAAGGGAGAGACGCCCTTACACCGAGCATGCATCGATGGCAAGCTGAACATGGTGAAGACACTCGTAGAAGGGGGCCACATGATCAACCCCCGCGACAACTGTGGCTGGCTTCCCTTGCATGAAGCCGCCAATTACGGTTACACTGACATTGTCACCTACCTCCTGGAGCACAATGCTCGCATCAACGACCGTGGGGGTGATGGATGCGGGGGTATTACCCCACTGCATGATGCCTGCAACTGCGGCAACGTCGACGTCATCAGACTTCTGGTTGATCGTGGCGCTAACGTTCACGCTAAGGATAATGAGGGTAACACCCCATTGACGGCGCTCATGGACTATCATCGCAGTAATTCAGCTGATCTTGGTCGTCAAGAGATTGCAGAACTGAAGGCTGTGCAACAGTTGCTCAGAAGAACGATGCAAGGAAACAACCCTCACTTGGAGAGCATGAGTCGACTAGAGGACATGGTGCAGAGTGGTAGCGAGGATGACCTCCCTTGCATCCGGCAACCTCCCCGCAGACAGGCTACCTCGTCCCACAAAAGGAGCCGGCAGGATGTGGGGAGAGACAGGGAATCAGAGAAAGAGTCAGAGGAAGAGGATGCACCCTATCGCAAGATTGACAAATCAATCCCGGAGAACCCGCTGCCAGCCACGGCCGTATACAGGGATGCCATCTGTGCTGTTGGCAGTGTGGCAACAAGGGTCAGTCAGGTTCACGCCCCATCTGTTGCTGAGAAATCCGCCATTGGACACTCCGCGGCCCTAATCCCAGAGGAAGAGAACATTGTAGATGATTGGTTGATCGATGACGTACTGCCGAGAAAACGACAACGCACTGACATATCTGCAGTTTTTACGGACCTCAGATTGCGGAAACAGCATGAGCCTTCGGAGAAACGCTCTCACCCCGAACCTGATGATTTTGACACTGACTCGGATGACGTGATGTTGTCCAGCAGCCCCCCTTGTCCACAGTTGACCATTGATGGAGAAGATACTGCAAGTTGTAGCCATGTTTCACAAATTCAGTTCGGGGCCGGAAGTAACACATCACGCAAGTCAGCAAAACGGCAGCAAAGAATTGACACGTTTGCTCGGCCATCGCACCATCAAGGTCATCGGTCGGTGCTGCCACCTAATTCTATAGGCAGTAGTCAACAGCCTGTCAGTGATGTTTCAATTAACCAACAGGTGGCAGCAGTAGCTGTGATGAGACTGAGAATTAATGTCGAAGGCAAGGTATTGGCCACAGTGACCAGTTGGGACTTGCTTCCCCTGCCTACTAGATACACACAAGCCTGTCAGAGTCTCAAGACAACGAGTTACCGTAACATTCGCAACCAACTGCAGGCGTGTGCCTCATCAAATGACCTTGACCTGACTGACCTTGCACTGCGATCCCAGCGGTTCCTGCCAGTTGCCAGAGCGCTACAATGCGAACATCGACTGAAAGAACTGCATCTGAACGGAAACCGACTTGGTGACTCTGGCTTAGAGAGCCTGTGTCAGATAGCTCCAACTATACCCAATTTGAGCACACTCAATCTCGCTTGCAACGAGATCACTCAGGTTGGACTGAAGAAACTCGCAGACTGTCTTCAGGTGTTGCCCTCTGATGGCAAAGAAGCACCCTTCCAGGTACTAGAAGTGCTGAATCTCAGTTTTAACCCACTTGGTGATTCATGCATGTTGTCATTAGCAATGGTATTGCACAAACTGTCGGCCCTGAGCACGCTTGGTCTGGCGTCATGTGACTTCACCCAGAAGTTGTTTCAACACCACCGACTGGCATTAGCTGAATCAATGCAGG

Transcript

LLU|FUN_027293-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023	Ank	Ankyrin repeat	Repeat	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR052311	Family	MMS22L-TONSL complex component	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46358	TONSOKU-LIKE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0031297	Biological Process	replication fork processing	Interproscan
GO:0043596	Cellular Component	nuclear replication fork	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-