Gene detail

Detailed information of LLU|FUN_026170-T1 in Lamellibrachia luymesi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
LLU\|FUN_026170-T1	ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL	scaffold_462	352635	369996	+

Gene Structure

More details in Jbrowse Sequence

CDS

LLU|FUN_026170-T1

ATGAAGGTGAAGGTGAAGGCTGTGGACTGGCCGTATGAGGACACGGGCAAAGACGGCAACGAGAAACAGAACAGCATTCACCAGCGCTCGATTGCCAACTACCTGGCCGACAACAAGTTTGACCTTGTCATCAACCTTCCGATGCGTGACGGGGGGTCACGGGCTGCGTCATCGTTCGTGACGCAGGGGTACCGCACTCGACGCATGGCTGTTGACTACTCTGTTCCGCTCATCACTGACGTCAAGTGTACCAAGATGTTTGTGGAGGCTTTGAGGCGATTGGGCAAACCTCCCCCGATCAACACAAACATTGACTGCATAACATCAAGGCGGATCATTCGACTTCCAGGCCTGATAGACGTGCACGTCCACCTGAGAGAGCCAGGTGGCACGGAGAAAGAGGACATCGCATCAGGGACAGCTGCAGCCCTGGCCGGGGGCATCACTATGGTCCTGGCCATGCCCAACACTAACCCTCCCATTGTGGACAAGGCAGCCCTGGCTATGGTGCAGAAACTGGCTGCTAGTTCTGCGCGATGTGACTATGGCCTGTACGTCGGAGCAAGCCAGGACAACGCAACGTCACTGCCGCTGTTAGCTCGTGACTGTGTCGCTCTCAAGATGTATCTCAATGATACGTTCTCGACACTCAAGATGGACAATGTCACACAGTGGATGAAGCACTTTGAACACTGGCCGAAGACGATGCCCATCTGTGTACATGCAGAAGGTCAGACAACGGCGGCCATCTTGCTATTTGCAGAACTCTTCCAGCGATCTCTCCATGTGTGCCATGTTGCAAGGAAGGAGGAGATATTGGTCATCAAGGCCGCGAAGGAACGCGGCCTTCAAGTGACATGTGAGGCAGCTCCCCATCATCTCTTCCTCACCTTGGATAACCTTGAGAGGATTGGCTCCGGTCGAGGTCAAGTGCGGCCAATGTTAGTAACCGCAGAAGACCAGAAGGCATTGTGGGATAACCTAGATATCATTGACTGCTTTGCGACAGATCACGCACCCCACCAAGTGGACGAGAAGGACAGTGAGAAGCCTCCACCCGGCTACCCCGGCCTGGAGACCATGCTGCCCCTACTACTGACCGCGGTCAACAGTGGACGCCTCACTCTCGTTGACCTCATAGAGAAGCTGTATGTGAACCCACGCAAGATCTTCGGGCTGCCTGACCAGCTCGATACGTACGTGGAAGTCGACCTGGACGAGGAATGGGTGATTCCTGCCGCGATGAAGTTCACCAAGTCCAAGTGGACGCCCTTTGAGGGCATGCGGGTCAAGGGTGCTGTACGACGGGTCGTATTGAGGGGCGAAGTGGTCTACATTGACGGACAGGTGTTGGCGCCCCCTGGCTATGGTCAGGATGTGAGGACATTGCCGAGGGCCAAGACGGAGGAAACTGTGAATTCCCCGCTGGTGCTCATCCCCGACTCCCCGGTTGATTCCCTCCACTCCTCTCTCCACTCCTCTGCTCCCGGGAGTCCCAAGAAATCTGCCATTGACCCGTCCAAGTTGACCCAACCCCCGAGAGTCACTCGCATCTACCGAGATGACTCACTGGGTGGGGCAGGCGATGCACCAATTCTGTGTGATGGTGGTGCCCCCAAGTGGCAGACTACGCCGTTCTACATGCCGATGTCTGTGGTCAGTCCAACCGCTGGACTCGCTGGACAACACATATTGACCGTCAACTTCACAAAGGAACAGGTTCACCAGTTGTTCAATCTTGCGCACAACTTCCGCGTGGCTGTCCAGAAGGAACGACCTCTGGATGACATTCTCAAGGGCAAGGTGATGGCGTCCGTGTTCTTTGAAGCGAGCACTAGAACCAGTTGCAGCTTCACCGCAGCCATGCAGAGATTGGGCGGAAGTGTCATCCATTTCAACGAGGCGTCCTCGTCAACTCGCAAGGGAGAGACTCTGGCTGACACTATCCAGATGATGTCTGCCTACTCAGACGTGGTGGTCCTCCGCCACCCGGAGCCTGGGGCTGTTAGGATGGCCGCCAGACACAGTCGCAAGCCAGTGATCAATGCGGGAGACGGGATTGGGGAGCATCCCACCCAGGCCCTGCTGGATGTTTTCACCATGCGGGAGGAGATCGGCACCGTTAACGGACTCACCATCACGATGGTGGGCGACCTGAAGCACGGCCGCACGGTGCACTCTCTCGCCCGTCTGCTCACCCTCTACAAGTGTAACATCAGATACGTCTCCCCTAAAAGTCTTCAGATGCCAGACGACATCCAGACTCTGCTCGCCTCCAAGGCAATCCCACAGGAGAGATTCAACAGTCTGGAGGAGGCTCTGCCGGATACAGACGTCCTCTACATGACCCGGGTACAGAAGGAACGCTTCGAGAGTGAGGAGGCCTACAGAGAGTGTTGTGGTCACTACGTTGTGACACCTCATCTGATGACGAGAGCCAAGCGTAGGATGGTTGTCATGCACCCCCTGCCCCGA

Transcript

LLU|FUN_026170-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00185	OTCace	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain	Domain	Interproscan
PF01979	Amidohydro_1	Amidohydrolase family	Domain	Interproscan
PF02142	MGS	MGS-like domain	Domain	Interproscan
PF02729	OTCace_N	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002082	Family	Aspartate carbamoyltransferase	Interproscan
IPR002195	Conserved_site	Dihydroorotase, conserved site	Interproscan
IPR006130	Family	Aspartate/ornithine carbamoyltransferase	Interproscan
IPR006131	Domain	Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain	Interproscan
IPR006132	Domain	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding	Interproscan
IPR006680	Domain	Amidohydrolase-related	Interproscan
IPR011059	Homologous_superfamily	Metal-dependent hydrolase, composite domain superfamily	Interproscan
IPR011607	Domain	Methylglyoxal synthase-like domain	Interproscan
IPR032466	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR036901	Homologous_superfamily	Aspartate/ornithine carbamoyltransferase superfamily	Interproscan
IPR036914	Homologous_superfamily	Methylglyoxal synthase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45753	ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004070	Molecular Function	aspartate carbamoyltransferase activity	Interproscan
GO:0006207	Biological Process	'de novo' pyrimidine nucleobase biosynthetic process	Interproscan
GO:0006520	Biological Process	amino acid metabolic process	Interproscan
GO:0016597	Molecular Function	amino acid binding	Interproscan
GO:0016743	Molecular Function	carboxyl- or carbamoyltransferase activity	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0016810	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	Interproscan
GO:0016812	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-