Detailed information of LLU|FUN_014778-T1 in Lamellibrachia luymesi Gene info
Gene IDAnnotationScaffoldStartEndStrand
LLU|FUN_014778-T1TRNA MODIFICATION GTPASE GTPBP3scaffold_224156196178163-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF01926MMR_HSR150S ribosome-binding GTPaseFamilyInterproscan
PF10396TrmE_NGTP-binding protein TrmE N-terminusFamilyInterproscan
PF12631MnmE_helicalMnmE helical domainFamilyInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001680RepeatWD40 repeatInterproscan
IPR004520FamilytRNA modification GTPase MnmEInterproscan
IPR005225DomainSmall GTP-binding protein domainInterproscan
IPR006073DomainGTP binding domainInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR018948DomainGTP-binding protein TrmE, N-terminalInterproscan
IPR025867DomainMnmE, helical domainInterproscan
IPR027266Homologous_superfamilyGTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1Interproscan
IPR027368Homologous_superfamilytRNA modification GTPase MnmE domain 2Interproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR031168DomainTrmE-type guanine nucleotide-binding domainInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR42714TRNA MODIFICATION GTPASE GTPBP3Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0002098Biological ProcesstRNA wobble uridine modificationInterproscan
GO:0003924Molecular FunctionGTPase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0006400Biological ProcesstRNA modificationInterproscan
GO:0030488Biological ProcesstRNA methylationInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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