Gene detail

Detailed information of LLU|FUN_010549-T1 in Lamellibrachia luymesi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
LLU\|FUN_010549-T1	N-ACETYLTRANSFERASE 10	scaffold_1745	53803	81406	-

Gene Structure

More details in Jbrowse Sequence

CDS

LLU|FUN_010549-T1

ATGTTTCGCTTTATCGTTGCAGTTGAAAATGGCGCCAAGGTTGTATTCTGTGCTAAACAAGAGGAACAAAAGGTCGGCGGGGAACTCGAAGATGAGCTCAATGCGAAAGGCCCGGGAGAAGCCACCTTTGTCCCATGTGACGTCACTAAGGAGGAAGATATTAAGAAGTTGATTAACACAACTGTTGAAAAATACGGGACGATCGACTGTTTGATCAACAACGCGGGAACCCACCCGCCTCGCATGCCAATAGACGACTTCAGCGCGGGGGATTTTCGAGAACTGTTCGAATTTCACGTGATTGGACATTTCTTAACATCAAAGTACGCTCTACCTTACCTGAGGAAGTCTAAAGGGAACATCATCTTCAATGCTAGTCTTGTTGCTACGATCGGTCAACATCACGCCGTTACGTACGTTGCAACTAAGGGGGCCTTAGTTGCGATGACCCGAGCGCTGGCCATAGACGAAGCCGTGCACGGAGTTCGAGTAAACAGACAAACTAGAAGAAGAGAAAACATGCGGAAGAAGATTGATAACCGTATCAGAGTACTGATTGAAAATGGAGTGGTGGCACAGCACCGATCTATGTTTGTTGTTGTTGGTGATCGTGCCCGAGACCAGGTGGTGATTTTGCATCACATGTTGTCAAAAGCACTGGTGAAGTCTCGACCATCAGTTCTGTGGTGCTACAAGAAGGAACTTGGCTTCAGCAGTCACCGCAAGAAGCGCATGCGTCAGCTGCAGAAGAAAGCACGTAGTGGCAAGCTGGACCTGAAGGAGGACGACCCCTTCGAACTATTTGTGGCTGCCACCAACATCCGCTATTGCTACTACTCAGAGACCCACAAGGTCCTTGGCAACACCTATGGCATGTGTGTGCTGCAGGACGACCCGCTGAGTGAGTCACAGCAGGAGTTGAAGCAGCTGAAGGAGTCGCTTCAGGACACCCAGCCAGTTGGCGTGCTGGTCAACTGTTGCCGGACCCTTGACCAGGGGAAAGCTGTTCTCAAATTCATTGATGCAATTTCGGAGAAGACATTGCGGAGTACAGTTGTCATGACGGCGGCCAGAGGGCGTGGCAAGTCTGCTGCACTTGGATTGGCCATGGCAAGCGCTATTGCATTTGGGTATGCCAACATATTTGTGACAGCACCAAGTCCTGAGAACCTGAAGACGATGTTTGAATTTATCTTCAAAGGCTTTGATGCCTTGGAATATCAGGAACACTTGGACTATGAGCTGGTTCAGTCGACCAACCCAGACTTCAACAAGGCAATCGTTCGTGTGAACATCTTCCGGGAGCATCGCCAGACGATCCAGTACATTCACCCATCAGACTCCCACAAACTCGGCCAGGCAGAGCTCGTGTGTATAGACGAGGCGGCGGCCATTCCACTCCCTCTCGTAAAGAACCTCCTTGGACCATATCTCGTCTTCATGTCTTCAACAATCAATGGCTATGAGGGAACTGGACGCTCACTCTCCCTCAAACTGCTGCAGCAGCTACGGCAGCAGAGCTCCACATTTGGAGGTATGGCCACTGAGGTGAAGAAGACTGGTCTGAAGTCATCAGATGTCACACAGTCAGCTACAGGTCGCATCTTGCATGAGGTGACCCTCGTTGAGTCTATTCGTTACGCTAATGGTGACGCAGTGGAGGCATGGCTCAACAACCTGCTGTGTCTGGACGCATCCAGTGTCCAGCCTCTGTCCTCAGGATGTCCGGTGCCATCGTCATGTGACCTGTACTATGTCAACCGAGACACACTGTTCTCCTACCACAAGGCATCAGAGATGTTCCTGCAGCGAGTCATGTCTCTCTATGTGTCCTCACATTACAAGAACTCACCCAATGATCTGCAGATGTTGTCGGATGCTCCGGCACATCATGTCTTCTGTCTGCTCGGACCCGTCGACCCGACCACCAACTCTCTCCCAGAAGTCCTCTGTGTGCTTCAGATCTGCCTTGAGGGGGAGATATCCCGCCAGACAATCCTGGACAGCCTGTCAAGAGGAAAAAGGGCATCAGGGGATCTCATCCCATGGACGATCTCCCAACAGTTGACCTGCAATCTCTTTCAGGTGACCTAA

Transcript

LLU|FUN_010549-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106	adh_short	short chain dehydrogenase	Domain	Interproscan
PF05127	Helicase_RecD	Helicase	Domain	Interproscan
PF08351	TmcA_N	tRNA(Met) cytidine acetyltransferase TmcA, N-terminal	Family	Interproscan
PF13718	GNAT_acetyltr_2	GNAT acetyltransferase 2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000182	Domain	GNAT domain	Interproscan
IPR002347	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR007807	Domain	Helicase domain	Interproscan
IPR013562	Domain	tRNA(Met) cytidine acetyltransferase TmcA, N-terminal	Interproscan
IPR020904	Conserved_site	Short-chain dehydrogenase/reductase, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032672	Family	TmcA/NAT10/Kre33	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10925	N-ACETYLTRANSFERASE 10	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000049	Molecular Function	tRNA binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0008080	Molecular Function	N-acetyltransferase activity	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016747	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan
GO:0030686	Cellular Component	90S preribosome	Interproscan
GO:1904812	Biological Process	rRNA acetylation involved in maturation of SSU-rRNA	Interproscan
GO:1990883	Molecular Function	rRNA cytidine N-acetyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-